Merge pull request #193 from ropensci/groups_count

small fix to account for a new meta field

R/oa2df.R

@@ -55,7 +55,7 @@ oa2df <- function(data, entity, options = NULL, count_only = FALSE, group_by = N
     return(do.call(rbind.data.frame, data))
   }
 
-  if (count_only && length(data) == 4) {
+  if (count_only && length(data) < 8) { # assuming less than 8 fields in output$meta
     return(unlist(data))
   }
 

README.md

@@ -136,7 +136,7 @@ works_from_dois |>
 
 | id          | display_name                                                              | first_author      | last_author        | so                      | url                                         | is_oa | top_concepts                          |
 |:------------|:--------------------------------------------------------------------------|:------------------|:-------------------|:------------------------|:--------------------------------------------|:------|:--------------------------------------|
-| W2755950973 | bibliometrix : An R-tool for comprehensive science mapping analysis       | Massimo Aria      | Corrado Cuccurullo | Journal of Informetrics | <https://doi.org/10.1016/j.joi.2017.08.007> | FALSE | Data science                          |
+| W2755950973 | bibliometrix : An R-tool for comprehensive science mapping analysis       | Massimo Aria      | Corrado Cuccurullo | Journal of Informetrics | <https://doi.org/10.1016/j.joi.2017.08.007> | FALSE | Workflow, Bibliometrics, Software     |
 | W2038196424 | Coverage and adoption of altmetrics sources in the bibliometric community | Stefanie Haustein | Jens Terliesner    | Scientometrics          | <https://doi.org/10.1007/s11192-013-1221-3> | FALSE | Altmetrics, Bookmarking, Social media |
 
 **Goal**: Download all works published by a set of authors (known
@@ -152,7 +152,7 @@ works_from_orcids <- oa_fetch(
   verbose = TRUE
 )
 #> Requesting url: https://api.openalex.org/works?filter=author.orcid%3A0000-0001-6187-6610%7C0000-0002-8517-9411
-#> Getting 2 pages of results with a total of 225 records...
+#> Getting 2 pages of results with a total of 229 records...
 
 works_from_orcids |>
   show_works() |>
@@ -161,10 +161,10 @@ works_from_orcids |>
 
 | id          | display_name                                                                                 | first_author      | last_author            | so                                                                    | url                                            | is_oa | top_concepts                          |
 |:------------|:---------------------------------------------------------------------------------------------|:------------------|:-----------------------|:----------------------------------------------------------------------|:-----------------------------------------------|:------|:--------------------------------------|
-| W2755950973 | bibliometrix : An R-tool for comprehensive science mapping analysis                          | Massimo Aria      | Corrado Cuccurullo     | Journal of Informetrics                                               | <https://doi.org/10.1016/j.joi.2017.08.007>    | FALSE | Data science                          |
+| W2755950973 | bibliometrix : An R-tool for comprehensive science mapping analysis                          | Massimo Aria      | Corrado Cuccurullo     | Journal of Informetrics                                               | <https://doi.org/10.1016/j.joi.2017.08.007>    | FALSE | Workflow, Bibliometrics, Software     |
 | W2741809807 | The state of OA: a large-scale analysis of the prevalence and impact of Open Access articles | Heather Piwowar   | Stefanie Haustein      | PeerJ                                                                 | <https://doi.org/10.7717/peerj.4375>           | TRUE  | Citation, License, Open science       |
 | W2122130843 | Scientometrics 2.0: New metrics of scholarly impact on the social Web                        | Jason Priem       | Bradely H. Hemminger   | First Monday                                                          | <https://doi.org/10.5210/fm.v15i7.2874>        | FALSE | Bookmarking, Altmetrics, Social media |
-| W2041540760 | How and why scholars cite on Twitter                                                         | Jason Priem       | Kaitlin Light Costello | Proceedings Of The Association For Information Science And Technology | <https://doi.org/10.1002/meet.14504701201>     | TRUE  | Citation, Conversation, Social media  |
+| W2041540760 | How and why scholars cite on Twitter                                                         | Jason Priem       | Kaitlin Light Costello | Proceedings of the Association for Information Science and Technology | <https://doi.org/10.1002/meet.14504701201>     | TRUE  | Citation, Conversation, Social media  |
 | W2038196424 | Coverage and adoption of altmetrics sources in the bibliometric community                    | Stefanie Haustein | Jens Terliesner        | Scientometrics                                                        | <https://doi.org/10.1007/s11192-013-1221-3>    | FALSE | Altmetrics, Bookmarking, Social media |
 | W2396414759 | The Altmetrics Collection                                                                    | Jason Priem       | Dario Taraborelli      | PLOS ONE                                                              | <https://doi.org/10.1371/journal.pone.0048753> | TRUE  | Altmetrics                            |
 
@@ -184,7 +184,7 @@ works_search <- oa_fetch(
   verbose = TRUE
 )
 #> Requesting url: https://api.openalex.org/works?filter=title.search%3Abibliometric%20analysis%7Cscience%20mapping%2Ccited_by_count%3A%3E50%2Cfrom_publication_date%3A2020-01-01%2Cto_publication_date%3A2021-12-31&sort=cited_by_count%3Adesc
-#> Getting 1 page of results with a total of 124 records...
+#> Getting 1 page of results with a total of 142 records...
 
 works_search |>
   show_works() |>
@@ -196,9 +196,9 @@ works_search |>
 | W3160856016 | How to conduct a bibliometric analysis: An overview and guidelines                                                            | Naveen Donthu       | Weng Marc Lim      | Journal of Business Research              | <https://doi.org/10.1016/j.jbusres.2021.04.070> | TRUE  | Bibliometrics, Field (mathematics), Resource (disambiguation) |
 | W3038273726 | Investigating the emerging COVID-19 research trends in the field of business and management: A bibliometric analysis approach | Surabhi Verma       | Anders Gustafsson  | Journal of Business Research              | <https://doi.org/10.1016/j.jbusres.2020.06.057> | TRUE  | Bibliometrics, Field (mathematics), Empirical research        |
 | W2990450011 | Forty-five years of Journal of Business Research: A bibliometric analysis                                                     | Naveen Donthu       | Debidutta Pattnaik | Journal of Business Research              | <https://doi.org/10.1016/j.jbusres.2019.10.039> | FALSE | Publishing, Bibliometrics, Empirical research                 |
-| W3044902155 | Financial literacy: A systematic review and bibliometric analysis                                                             | Kirti Goyal         | Satish Kumar       | International Journal of Consumer Studies | <https://doi.org/10.1111/ijcs.12605>            | FALSE | Financial literacy, Citation, Content analysis                |
-| W3001491100 | Software tools for conducting bibliometric analysis in science: An up-to-date review                                          | Jose A. Moral-Munoz | Manuel J. Cobo     | Profesional De La Informacion             | <https://doi.org/10.3145/epi.2020.ene.03>       | TRUE  | Bibliometrics, Software                                       |
-| W2990688366 | A bibliometric analysis of board diversity: Current status, development, and future research directions                       | H. Kent Baker       | Arunima Haldar     | Journal of Business Research              | <https://doi.org/10.1016/j.jbusres.2019.11.025> | FALSE | Diversity (politics), Current (fluid), Bibliometrics          |
+| W3001491100 | Software tools for conducting bibliometric analysis in science: An up-to-date review                                          | José A. Moral-Muñoz | Manuel J. Cobo     | Profesional De La Informacion             | <https://doi.org/10.3145/epi.2020.ene.03>       | TRUE  | Bibliometrics, Visualization, Set (abstract data type)        |
+| W3044902155 | Financial literacy: A systematic review and bibliometric analysis                                                             | Kirti Goyal         | Satish Kumar       | International Journal of Consumer Studies | <https://doi.org/10.1111/ijcs.12605>            | FALSE | Financial literacy, Content analysis, Citation                |
+| W2990688366 | A bibliometric analysis of board diversity: Current status, development, and future research directions                       | H. Kent Baker       | Arunima Haldar     | Journal of Business Research              | <https://doi.org/10.1016/j.jbusres.2019.11.025> | FALSE | Diversity (politics), Ethnic group, Bibliometrics             |
 
 ### 🧑 Authors
 
@@ -222,8 +222,8 @@ authors_from_orcids |>
 
 | id          | display_name | orcid               | works_count | cited_by_count | affiliation_display_name         | top_concepts                             |
 |:------------|:-------------|:--------------------|------------:|---------------:|:---------------------------------|:-----------------------------------------|
-| A5069892096 | Massimo Aria | 0000-0002-8517-9411 |         179 |           5530 | University of Naples Federico II | Statistics, Pathology, Internal medicine |
-| A5023888391 | Jason Priem  | 0000-0001-6187-6610 |          53 |           2130 | Our Research                     | World Wide Web, Library science, Law     |
+| A5069892096 | Massimo Aria | 0000-0002-8517-9411 |         176 |           5978 | University of Naples Federico II | Statistics, Pathology, Internal medicine |
+| A5023888391 | Jason Priem  | 0000-0001-6187-6610 |          52 |           2163 | OurResearch                      | World Wide Web, Library science, Law     |
 
 **Goal**: Acquire information on the authors of this package.
 
@@ -242,8 +242,8 @@ authors_from_names |>
 
 | id          | display_name | orcid               | works_count | cited_by_count | affiliation_display_name         | top_concepts                             |
 |:------------|:-------------|:--------------------|------------:|---------------:|:---------------------------------|:-----------------------------------------|
-| A5069892096 | Massimo Aria | 0000-0002-8517-9411 |         179 |           5530 | University of Naples Federico II | Statistics, Pathology, Internal medicine |
-| A5023888391 | Jason Priem  | 0000-0001-6187-6610 |          53 |           2130 | Our Research                     | World Wide Web, Library science, Law     |
+| A5069892096 | Massimo Aria | 0000-0002-8517-9411 |         176 |           5978 | University of Naples Federico II | Statistics, Pathology, Internal medicine |
+| A5023888391 | Jason Priem  | 0000-0001-6187-6610 |          52 |           2163 | OurResearch                      | World Wide Web, Library science, Law     |
 
 **Goal**: Download all authors’ records of scholars who work at the
 [University of Naples Federico
@@ -263,7 +263,7 @@ my_arguments <- list(
 
 do.call(oa_fetch, c(my_arguments, list(count_only = TRUE)))
 #>      count db_response_time_ms page per_page
-#> [1,]    21                  76    1        1
+#> [1,]    20                 175    1        1
 
 if (do.call(oa_fetch, c(my_arguments, list(count_only = TRUE)))[1]>0){
 do.call(oa_fetch, my_arguments) |>
@@ -272,14 +272,14 @@ do.call(oa_fetch, my_arguments) |>
 }
 ```
 
-| id          | display_name          | orcid               | works_count | cited_by_count | affiliation_display_name         | top_concepts                                         |
-|:------------|:----------------------|:--------------------|------------:|---------------:|:---------------------------------|:-----------------------------------------------------|
-| A5032217427 | Nicola Longo          | 0000-0002-3677-1216 |        1092 |          11416 | University of Naples Federico II | Internal medicine, Genetics, Pathology               |
-| A5076706548 | Salvatore Capozziello | 0000-0003-4886-2024 |         891 |          30196 | University of Naples Federico II | Quantum mechanics, Astronomy, Classical mechanics    |
-| A5072318694 | G. Chiefari           | NA                  |         886 |          44892 | University of Naples Federico II | Particle physics, Quantum mechanics, Nuclear physics |
-| A5003544129 | Annamaria Colao       | NA                  |         810 |          22569 | University of Naples Federico II | Internal medicine, Endocrinology, Biochemistry       |
-| A5035636337 | S. Patricelli         | NA                  |         796 |          42271 | University of Naples Federico II | Quantum mechanics, Particle physics, Nuclear physics |
-| A5051324603 | Massimo Chiariello    | NA                  |         777 |          15078 | University of Naples Federico II | Internal medicine, Cardiology, Endocrinology         |
+| id          | display_name         | orcid               | works_count | cited_by_count | affiliation_display_name         | top_concepts                                         |
+|:------------|:---------------------|:--------------------|------------:|---------------:|:---------------------------------|:-----------------------------------------------------|
+| A5072318694 | G. Chiefari          | NA                  |         878 |          45134 | University of Naples Federico II | Quantum mechanics, Particle physics, Nuclear physics |
+| A5035636337 | S. Patricelli        | NA                  |         793 |          42464 | University of Naples Federico II | Quantum mechanics, Particle physics, Nuclear physics |
+| A5051324603 | Massimo Chiariello   | NA                  |         738 |          15003 | University of Naples Federico II | Internal medicine, Cardiology, Endocrinology         |
+| A5026402548 | Gabriella Fabbrocini | 0000-0002-0064-1874 |         724 |          10355 | University of Naples Federico II | Dermatology, Internal medicine, Pathology            |
+| A5057084037 | Fabrizio Pane        | 0000-0003-2563-4125 |         707 |          19076 | University of Naples Federico II | Internal medicine, Immunology, Genetics              |
+| A5070034601 | Annamaria Colao      | 0000-0003-4049-2559 |         684 |          26625 | University of Naples Federico II | Internal medicine, Endocrinology, Pathology          |
 
 ## 🍒 Example analyses
 
@@ -336,7 +336,7 @@ italy_insts <- oa_fetch(
   verbose = TRUE
 )
 #> Requesting url: https://api.openalex.org/institutions?filter=country_code%3Ait%2Ctype%3Aeducation
-#> Getting 2 pages of results with a total of 232 records...
+#> Getting 2 pages of results with a total of 234 records...
 
 italy_insts |>
   slice_max(cited_by_count, n = 8) |>
@@ -475,7 +475,7 @@ snowball_docs <- oa_snowball(
 #> Getting 1 page of results with a total of 2 records...
 #> Collecting all documents citing the target papers...
 #> Requesting url: https://api.openalex.org/works?filter=cites%3AW1963991285%7CW1964141474
-#> Getting 3 pages of results with a total of 494 records...
+#> Getting 3 pages of results with a total of 501 records...
 #> Collecting all documents cited by the target papers...
 #> Requesting url: https://api.openalex.org/works?filter=cited_by%3AW1963991285%7CW1964141474
 #> Getting 1 page of results with a total of 87 records...
@@ -526,20 +526,20 @@ ngrams_data
 
 lapply(ngrams_data$ngrams, head, 3)
 #> [[1]]
-#>                                        ngram ngram_tokens ngram_count
-#> 1                 brain basis and core cause            5           2
-#> 2                     cause be not yet fully            5           2
-#> 3 include structural and functional magnetic            5           2
+#>                                        ngram ngram_count ngram_tokens
+#> 1                 brain basis and core cause           2            5
+#> 2                     cause be not yet fully           2            5
+#> 3 include structural and functional magnetic           2            5
 #>   term_frequency
 #> 1   0.0006637902
 #> 2   0.0006637902
 #> 3   0.0006637902
 #> 
 #> [[2]]
-#>                                          ngram ngram_tokens ngram_count
-#> 1          intact but less accessible phonetic            5           1
-#> 2 accessible phonetic representation in Adults            5           1
-#> 3       representation in Adults with Dyslexia            5           1
+#>                                          ngram ngram_count ngram_tokens
+#> 1          intact but less accessible phonetic           1            5
+#> 2 accessible phonetic representation in Adults           1            5
+#> 3       representation in Adults with Dyslexia           1            5
 #>   term_frequency
 #> 1   0.0003756574
 #> 2   0.0003756574
@@ -571,10 +571,7 @@ does this automatically if you have `{curl} >= v5.0.0`).
 
 ## 💫 About OpenAlex
 
-<figure>
-<img src="man/figures/oar.png" alt="oar-img" />
-<figcaption aria-hidden="true">oar-img</figcaption>
-</figure>
+![oar-img](man/figures/oar.png)
 
 <div style="text-align: right">