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Add bwa #103

Merged
merged 7 commits into from
Nov 8, 2024
Merged

Add bwa #103

merged 7 commits into from
Nov 8, 2024

Commits on Aug 19, 2024

  1. added bwa as mapping option 

    relates to Replace minimap2 with another mapper for short-read data? #102
    @MarieLataretu
    MarieLataretu committed Aug 19, 2024
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  2. added stub tests for bwa, added tags

    @MarieLataretu
    MarieLataretu committed Aug 19, 2024
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Commits on Aug 20, 2024

  1. bump bwa container

    @MarieLataretu
    MarieLataretu committed Aug 20, 2024
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  2. updated help and citations

    @MarieLataretu
    MarieLataretu committed Aug 20, 2024
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Commits on Aug 21, 2024

  1. increase RAM for BWA if failing (indexing)

    @hoelzer
    hoelzer committed Aug 21, 2024
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Commits on Sep 5, 2024

  1. addressed reviewer comments

    @MarieLataretu
    MarieLataretu committed Sep 5, 2024
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  2. Merge branch 'add_bwa' of https://github.com/hoelzer/clean into add_bwa

    @MarieLataretu
    MarieLataretu committed Sep 5, 2024
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