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incr ram further when err
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hoelzer committed Aug 13, 2024
1 parent 78f15e1 commit a21402b
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion configs/node.config
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
process {
withLabel: minimap2 { cpus = {24 * task.attempt}; memory = {24.GB * task.attempt}; maxRetries = 4 ; errorStrategy = { task.exitStatus in 1 ? 'retry' : 'terminate' }; }
withLabel: bbmap { cpus = {24 * task.attempt}; memory = {24.GB * task.attempt}; maxRetries = 4 ; errorStrategy = { task.exitStatus in 1 || 137 ? 'retry' : 'terminate' }; }
withLabel: bbmap { cpus = {24 * task.attempt}; memory = {12.GB * task.attempt}; maxRetries = 5 ; errorStrategy = { task.exitStatus in 1 || 137 ? 'retry' : 'terminate' }; }
withLabel: smallTask { cpus = 1; memory = 2.GB }
withLabel: pysam { cpus = 2; memory = 4.GB }
withLabel: fastqc { cpus = {2 * task.attempt}; memory = {4.GB * task.attempt } ; maxRetries = 3 ; errorStrategy = { task.exitStatus in 130..140 ? 'retry' : 'terminate' }; }
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