ci: try to set env variables differently #64
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| name: pkgdown | |
| on: | |
| push: | |
| branches: | |
| - jomain | |
| # on: | |
| # repository_dispatch: | |
| # types: [trigger-workflow-2] | |
| jobs: | |
| build-and-deploy: | |
| runs-on: ubuntu-latest | |
| container: rformassspectrometry/metabonaut:latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| ## Set the R library to the directory matching the | |
| ## R packages cache step further below when running on Docker (Linux). | |
| - name: Set R Library home on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| mkdir /__w/_temp/Library | |
| mkdir /__w/Rtmp | |
| echo ".libPaths('/__w/_temp/Library')" > ~/.Rprofile | |
| - name: Checkout package | |
| uses: actions/checkout@v4 | |
| - name: Verify Quarto Installation | |
| run: quarto --version | |
| - name: Install rcmdcheck | |
| run: | | |
| install.packages('rcmdcheck') | |
| shell: Rscript {0} | |
| # - name: Check | |
| # env: | |
| # _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| # run: | | |
| # Rscript -e "rcmdcheck::rcmdcheck(args = c('--no-manual'), error_on = 'error', check_dir = 'check')" | |
| # shell: bash {0} | |
| - name: Install deploy dependencies | |
| run: | | |
| apt-get update | |
| apt-get -y install rsync | |
| - name: Install pkgdown | |
| if: github.ref == 'refs/heads/main' | |
| run: | | |
| install.packages('pkgdown') | |
| shell: Rscript {0} | |
| - name: Install package | |
| if: github.ref == 'refs/heads/main' | |
| run: R CMD INSTALL . | |
| # - name: Build site | |
| # env: | |
| # QUARTO_PRINT_STACK: true | |
| # QUARTO_LOG_LEVEL: DEBUG | |
| # run: | | |
| # install.packages("unixtools", repos = "http://www.rforge.net/") | |
| # unixtools::set.tempdir("/__w/Rtmp") | |
| # pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | |
| # shell: Rscript {0} | |
| - name: Build site | |
| run: | | |
| export QUARTO_PRINT_STACK=true | |
| export QUARTO_LOG_LEVEL=DEBUG | |
| Rscript -e "install.packages('unixtools', repos = 'http://www.rforge.net/')" | |
| Rscript -e "unixtools::set.tempdir('/__w/Rtmp')" | |
| Rscript -e "pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)" | |
| shell: Rscript {0} | |
| - name: Deploy to GitHub pages 🚀 | |
| if: github.event_name != 'pull_request' | |
| uses: JamesIves/[email protected] | |
| with: | |
| clean: false | |
| branch: gh-pages | |
| folder: docs | |
| ## Note that you need to run pkgdown::deploy_to_branch(new_process = FALSE) | |
| ## at least one locally before this will work. This creates the gh-pages | |
| ## branch (erasing anything you haven't version controlled!) and | |
| ## makes the git history recognizable by pkgdown. |