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🎉 gains initial R package scaffolding (#1)
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jdhoffa authored Dec 7, 2024
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8 changes: 8 additions & 0 deletions .Rbuildignore
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^multiverse\.Rproj$
^\.Rproj\.user$
^LICENSE\.md$
^\.github$
^codecov\.yml$
^_pkgdown\.yml$
^docs$
^pkgdown$
1 change: 1 addition & 0 deletions .github/.gitignore
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*.html
47 changes: 47 additions & 0 deletions .github/CONTRIBUTING.md
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# Contributing to multiverse

This outlines how to propose a change to multiverse.
For a detailed discussion on contributing to this and other tidyverse packages, please see the [development contributing guide](https://rstd.io/tidy-contrib) and our [code review principles](https://code-review.tidyverse.org/).

## Fixing typos

You can fix typos, spelling mistakes, or grammatical errors in the documentation directly using the GitHub web interface, as long as the changes are made in the _source_ file.
This generally means you'll need to edit [roxygen2 comments](https://roxygen2.r-lib.org/articles/roxygen2.html) in an `.R`, not a `.Rd` file.
You can find the `.R` file that generates the `.Rd` by reading the comment in the first line.

## Bigger changes

If you want to make a bigger change, it's a good idea to first file an issue and make sure someone from the team agrees that it’s needed.
If you’ve found a bug, please file an issue that illustrates the bug with a minimal
[reprex](https://www.tidyverse.org/help/#reprex) (this will also help you write a unit test, if needed).
See our guide on [how to create a great issue](https://code-review.tidyverse.org/issues/) for more advice.

### Pull request process

* Fork the package and clone onto your computer. If you haven't done this before, we recommend using `usethis::create_from_github("r-staceans/multiverse", fork = TRUE)`.

* Install all development dependencies with `devtools::install_dev_deps()`, and then make sure the package passes R CMD check by running `devtools::check()`.
If R CMD check doesn't pass cleanly, it's a good idea to ask for help before continuing.
* Create a Git branch for your pull request (PR). We recommend using `usethis::pr_init("brief-description-of-change")`.

* Make your changes, commit to git, and then create a PR by running `usethis::pr_push()`, and following the prompts in your browser.
The title of your PR should briefly describe the change.
The body of your PR should contain `Fixes #issue-number`.

* For user-facing changes, add a bullet to the top of `NEWS.md` (i.e. just below the first header). Follow the style described in <https://style.tidyverse.org/news.html>.

### Code style

* New code should follow the tidyverse [style guide](https://style.tidyverse.org).
You can use the [styler](https://CRAN.R-project.org/package=styler) package to apply these styles, but please don't restyle code that has nothing to do with your PR.

* We use [roxygen2](https://cran.r-project.org/package=roxygen2), with [Markdown syntax](https://cran.r-project.org/web/packages/roxygen2/vignettes/rd-formatting.html), for documentation.

* We use [testthat](https://cran.r-project.org/package=testthat) for unit tests.
Contributions with test cases included are easier to accept.

## Code of Conduct

Please note that the multiverse project is released with a
[Contributor Code of Conduct](CODE_OF_CONDUCT.md). By contributing to this
project you agree to abide by its terms.
62 changes: 62 additions & 0 deletions .github/workflows/R-CMD-check.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
#
# NOTE: This workflow is overkill for most R packages and
# check-standard.yaml is likely a better choice.
# usethis::use_github_action("check-standard") will install it.
on:
push:
branches: [main, master]
pull_request:

name: R-CMD-check.yaml

permissions: read-all

jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}

name: ${{ matrix.config.os }} (${{ matrix.config.r }})

strategy:
fail-fast: false
matrix:
config:
- {os: macos-latest, r: 'release'}

- {os: windows-latest, r: 'release'}
# use 4.0 or 4.1 to check with rtools40's older compiler
- {os: windows-latest, r: 'oldrel-4'}

- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}
- {os: ubuntu-latest, r: 'oldrel-2'}
- {os: ubuntu-latest, r: 'oldrel-3'}
- {os: ubuntu-latest, r: 'oldrel-4'}

env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes

steps:
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-pandoc@v2

- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::rcmdcheck
needs: check

- uses: r-lib/actions/check-r-package@v2
with:
upload-snapshots: true
build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
49 changes: 49 additions & 0 deletions .github/workflows/pkgdown.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
pull_request:
release:
types: [published]
workflow_dispatch:

name: pkgdown.yaml

permissions: read-all

jobs:
pkgdown:
runs-on: ubuntu-latest
# Only restrict concurrency for non-PR jobs
concurrency:
group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-pandoc@v2

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::pkgdown, local::.
needs: website

- name: Build site
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
shell: Rscript {0}

- name: Deploy to GitHub pages 🚀
if: github.event_name != 'pull_request'
uses: JamesIves/[email protected]
with:
clean: false
branch: gh-pages
folder: docs
85 changes: 85 additions & 0 deletions .github/workflows/pr-commands.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
issue_comment:
types: [created]

name: pr-commands.yaml

permissions: read-all

jobs:
document:
if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/document') }}
name: document
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- uses: actions/checkout@v4

- uses: r-lib/actions/pr-fetch@v2
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::roxygen2
needs: pr-document

- name: Document
run: roxygen2::roxygenise()
shell: Rscript {0}

- name: commit
run: |
git config --local user.name "$GITHUB_ACTOR"
git config --local user.email "[email protected]"
git add man/\* NAMESPACE
git commit -m 'Document'
- uses: r-lib/actions/pr-push@v2
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}

style:
if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/style') }}
name: style
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- uses: actions/checkout@v4

- uses: r-lib/actions/pr-fetch@v2
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}

- uses: r-lib/actions/setup-r@v2

- name: Install dependencies
run: install.packages("styler")
shell: Rscript {0}

- name: Style
run: styler::style_pkg()
shell: Rscript {0}

- name: commit
run: |
git config --local user.name "$GITHUB_ACTOR"
git config --local user.email "[email protected]"
git add \*.R
git commit -m 'Style'
- uses: r-lib/actions/pr-push@v2
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}
61 changes: 61 additions & 0 deletions .github/workflows/test-coverage.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
pull_request:

name: test-coverage.yaml

permissions: read-all

jobs:
test-coverage:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

steps:
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::covr, any::xml2
needs: coverage

- name: Test coverage
run: |
cov <- covr::package_coverage(
quiet = FALSE,
clean = FALSE,
install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
)
covr::to_cobertura(cov)
shell: Rscript {0}

- uses: codecov/codecov-action@v4
with:
# Fail if error if not on PR, or if on PR and token is given
fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
file: ./cobertura.xml
plugin: noop
disable_search: true
token: ${{ secrets.CODECOV_TOKEN }}

- name: Show testthat output
if: always()
run: |
## --------------------------------------------------------------------
find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash

- name: Upload test results
if: failure()
uses: actions/upload-artifact@v4
with:
name: coverage-test-failures
path: ${{ runner.temp }}/package
5 changes: 5 additions & 0 deletions .gitignore
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.Rproj.user
.Rhistory
.RData
.Ruserdata
docs
16 changes: 16 additions & 0 deletions DESCRIPTION
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Package: multiverse
Title: What the Package Does (One Line, Title Case)
Version: 0.0.0.9000
Authors@R:
person("Jackson", "Hoffart", , "[email protected]", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-8600-5042"))
Description: What the package does (one paragraph).
License: MIT + file LICENSE
URL: https://github.com/r-staceans/multiverse, https://r-staceans.github.io/multiverse/
BugReports: https://github.com/r-staceans/multiverse/issues
Suggests:
testthat (>= 3.0.0)
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
2 changes: 2 additions & 0 deletions LICENSE
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YEAR: 2024
COPYRIGHT HOLDER: multiverse authors
21 changes: 21 additions & 0 deletions LICENSE.md
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# MIT License

Copyright (c) 2024 multiverse authors

Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
2 changes: 2 additions & 0 deletions NAMESPACE
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# Generated by roxygen2: do not edit by hand

3 changes: 3 additions & 0 deletions R/add.R
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add <- function(x, y) {
x + y
}
6 changes: 6 additions & 0 deletions R/multiverse-package.R
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#' @keywords internal
"_PACKAGE"

## usethis namespace: start
## usethis namespace: end
NULL
5 changes: 5 additions & 0 deletions README.md
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# multiverse
<!-- badges: start -->
[![R-CMD-check](https://github.com/r-staceans/multiverse/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/r-staceans/multiverse/actions/workflows/R-CMD-check.yaml)
[![Codecov test coverage](https://codecov.io/gh/r-staceans/multiverse/graph/badge.svg)](https://app.codecov.io/gh/r-staceans/multiverse)
[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
<!-- badges: end -->
5 changes: 5 additions & 0 deletions _pkgdown.yml
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url: https://r-staceans.github.io/multiverse/
template:
bootstrap: 5
development:
mode: auto
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