Upgrade cvxopt
#348
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Upgrade cvxopt
#348
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paddyroddy
commented
Jul 20, 2023
paddyroddy
commented
Jul 20, 2023
paddyroddy
changed the title
cvxopt - hopefully can remove condacvxopt
Codecov ReportPatch coverage:
❗ Your organization is not using the GitHub App Integration. As a result you may experience degraded service beginning May 15th. Please install the Github App Integration for your organization. Read more. Additional details and impacted files@@ Coverage Diff @@
## main #348 +/- ##
==========================================
+ Coverage 85.91% 86.00% +0.09%
==========================================
Files 30 30
Lines 2172 2165 -7
Branches 396 393 -3
==========================================
- Hits 1866 1862 -4
+ Misses 225 223 -2
+ Partials 81 80 -1
☔ View full report in Codecov by Sentry. |
quantumjot
approved these changes
Jul 21, 2023
Co-authored-by: Alan R Lowe <[email protected]>
p-j-smith
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that referenced
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Aug 8, 2023
* Update `pre-commit` and make some other fixes * Update version pins * Remove references to `cvxopt` * Add type Co-authored-by: Alan R Lowe <[email protected]> * Use `|=` * Remove extra dependencies --------- Co-authored-by: Alan R Lowe <[email protected]>
p-j-smith
added a commit
that referenced
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Aug 8, 2023
* Update plugin reader to return early for unsupported filetypes * Add a function btrack.utils.napari_to_tracks Converts napari layer data into a list of Tracklets * Add hdf writer function to the plugin * Add plugin writer to napari config * Use empty dict for graph and properties if they are not layer metadata * Determine parent, root, and children from graph if it exists * Make black happy * Add the tracks.h5 example dataset * Set correct parent, root, and generation when converting napari to track * Add test for btrack.utils.napari_to_tracks The z-coordinates are not compared as dummy objects in the sample set have non-zero values even though it's a 2D dataset * Use constants.States enum when setting default label rather int literal Also inherit from enum.IntEnum for constants.States otherwise numpy complains that it can't be used to set as a fill value with np.full_like * Upgrade `cvxopt` (#348) * Update `pre-commit` and make some other fixes * Update version pins * Remove references to `cvxopt` * Add type Co-authored-by: Alan R Lowe <[email protected]> * Use `|=` * Remove extra dependencies --------- Co-authored-by: Alan R Lowe <[email protected]> * Move `fixture`s into `conftest.py` (#331) * Move `fixture`s into `conftest.py` * Just import `btrack` * Move `Container` * Fix tests * Rename writer * Use `qtpy` * Don't set widget values in the widgets (as done from file) (#379) * Remove unnecessary `.setValue` calls * Check status done by config file * Don't store refs when converting tracks to napari * Fix description of return values from napari_to_tracks --------- Co-authored-by: Patrick Roddy <[email protected]> Co-authored-by: Alan R Lowe <[email protected]>
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As of
1.3.1cvxoptnow has Arm wheels.Also upgrade
pre-commitand fixed appropriate things.