Dev preview installation

Start with a QIIME 2 environment

Extra Dependencies

pip install lxml

(These are a part of the conda recipe, which we are skipping for these steps, [staging repos are in flux right now])

Dev Install

git clone https://github.com/qiime2/q2galaxy.git
cd q2galaxy
make dev

Mystery Stew

git clone https://github.com/qiime2/q2-mystery-stew.git
cd q2galaxy
make dev

Planemo (for testing)

pip install planemo

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Usage

Generate the tools you wish to use:

q2galaxy template --help

To execute current tests, run:

make test

To run a temporary galaxy instance, run:

planemo serve --install_galaxy \
  --galaxy_branch qiime2 \
  --galaxy_source https://github.com/ebolyen/galaxy.git \
  --no_conda_auto_install \
  <DIRECTORY WITH TOOLS FROM q2galaxy template HERE>

(this will take a while the first time, but the UI will be cached once it is built)