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map formats and artifact classes to EDAM (types and data, respectively?) #83

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map formats and artifact classes to EDAM (types and data, respectively?)

map formats and artifact classes to EDAM (types and data, respectively?) #83

Triggered via pull request March 7, 2024 09:02
@bernt-matthiasbernt-matthias
opened #59
bernt-matthias:fastq
Status Success
Total duration 12m 36s
Artifacts 3

pr.yml

on: pull_request
Matrix: Setup cache and determine changed repositories
Matrix: Lint Python scripts
Matrix: Lint tool-list
Matrix: Lint R scripts
Matrix: Test tools
Matrix: Combine chunked test results
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15 warnings
Setup cache and determine changed repositories (3.7)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v1, actions/cache@v2, actions/checkout@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Setup cache and determine changed repositories (3.7)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v1, actions/cache@v2, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Setup cache and determine changed repositories (3.7)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Lint tool-list (3.7)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/setup-python@v1, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Lint tool-list (3.7)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/setup-python@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Lint Python scripts (3.7)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/setup-python@v1, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Lint Python scripts (3.7)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/setup-python@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Lint R scripts (ubuntu-20.04, 4.0.1)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Lint R scripts (ubuntu-20.04, 4.0.1)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Test tools (0, 3.7)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/setup-python@v1, actions/cache@v2, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Test tools (0, 3.7)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/setup-python@v1, actions/cache@v2, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Test tools (1, 3.7)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/setup-python@v1, actions/cache@v2, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Test tools (1, 3.7)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/setup-python@v1, actions/cache@v2, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Combine chunked test results (3.7)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/download-artifact@v2, actions/setup-python@v1, actions/cache@v2, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Combine chunked test results (3.7)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/download-artifact@v2, actions/setup-python@v1, actions/cache@v2, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Artifacts

Produced during runtime
Name Size
All tool test results Expired
349 KB
Tool test output 0 Expired
338 KB
Tool test output 1 Expired
349 KB