add test showing error during import job preparion with latest Galaxy #58
Workflow file for this run
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| name: Render Galaxy Tools | |
| on: | |
| workflow_dispatch: {} | |
| push: | |
| branches: [main] | |
| paths-ignore: | |
| - 'tool_collections/**' | |
| - 'tools/**' | |
| - 'README.md' | |
| pull_request: | |
| branches: [main] | |
| paths-ignore: | |
| - 'tool_collections/**' | |
| - 'tools/**' | |
| - 'README.md' | |
| jobs: | |
| render: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: checkout source | |
| uses: actions/checkout@v2 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-activate-base: true | |
| activate-environment: "" | |
| - name: render tools | |
| shell: bash -l {0} | |
| run: | | |
| conda install pyyaml | |
| make render | |
| - name: create tools PR | |
| uses: peter-evans/create-pull-request@v3 | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| with: | |
| add-paths: tools | |
| branch: create-pull-request/patch-tools | |
| token: ${{ secrets.Q2D2_TOKEN }} | |
| commit-message: Update Galaxy Tools | |
| committer: q2d2 <[email protected]> | |
| author: q2d2 <[email protected]> | |
| title: Automated re-render of Galaxy Tools | |
| body: Results of `make render` on `main` | |
| - name: create collections PR | |
| uses: peter-evans/create-pull-request@v3 | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| with: | |
| add-paths: tool_collections | |
| branch: create-pull-request/patch-collections | |
| token: ${{ secrets.Q2D2_TOKEN }} | |
| commit-message: Update Galaxy Tool Collections | |
| committer: q2d2 <[email protected]> | |
| author: q2d2 <[email protected]> | |
| title: Automated re-render of Galaxy Tool Collections (wait to merge) | |
| body: | | |
| Results of `make render` on `main`. | |
| DO NOT MERGE until all tools in the sibling PR have successfully deployed. |