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ncfrey committed Mar 4, 2024
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2 changes: 1 addition & 1 deletion LICENSE
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MIT License

Copyright (c) 2024 Prescient Design
Copyright (c) 2024 Genentech, Inc.

Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
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3 changes: 3 additions & 0 deletions README.md
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This will generate a dataframe of embeddings and also [log them to wandb](https://genentech.wandb.io/freyn6/lobster-embedding/runs/luv4ebtv?workspace=user-freyn6).

### Regression and classification
For robust multitask modeling, we recommend using `lobster` with [cortex]((https://github.com/prescient-design/cortex/tree/main)). For simple baselines using `lobster` embeddings, use `lobster.model.LinearProbe`.

### Likelihoods
Likelihoods from an autoregressive `PrescientCLM` or pseudo-log likelihoods ("naturalness") from a `PrescientPMLM` can be computed for a list of `sequences` using

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