cicd

.github/workflows/ci.yml

@@ -40,7 +40,7 @@ jobs:
       shell: bash -l {0}
       run: |
         set -vxeuo pipefail
-        python -m pip install -r requirements.txt
+        python -m pip install -r requirements.in
         python -m pip install .
         python -m pip list
 

.github/workflows/push_main.yml

@@ -30,7 +30,7 @@ jobs:
       - uses: "actions/setup-python@v5"
         with:
           python-version: ${{ matrix.python }}
-      - run: "python -m pip install --editable '.[test]'"
+      - run: "python -m pip install --editable ."
       - run: "python -m pytest"
       - env:
           CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

pyproject.toml

@@ -16,8 +16,6 @@ readme = {file = "README.md"}
 
 [tool.setuptools.dynamic.optional-dependencies]
 dev = {file = ["requirements-dev.in"]}
-local = {file = ["requirements-local.in"]}
-prescient = {file = ["requirements-prescient.in"]}
 
 [tool.setuptools.packages.find]
 where = ["src"]
@@ -79,7 +77,7 @@ ignore = [
     "E741",  # ambiguous-variable-name
 ]
 exclude = [
-  "scripts"
+  "src/lobster/model/openfold_utils"
 ]
 
 [tool.ruff.per-file-ignores]