GC QC stubs (closes #1366)

maintenance/main.py

@@ -174,6 +174,22 @@ def test_mutation_rate(self, name, rate):
         $chromosome_rate_dict.items())
     def test_chromosome_ploidy(self, name, ploidy):
         assert ploidy == self.genome.get_chromosome(name).ploidy
+
+    @pytest.mark.skip("Gene conversion length QC not done yet")
+    @pytest.mark.parametrize(
+        ["name", "gene_conversion_length"],
+        $chromosome_rate_dict.items())
+    def test_chromosome_gene_conversion_length(self, name, gene_conversion_length):
+        assert gene_conversion_length ==
+            self.genome.get_chromosome(name).gene_conversion_length
+
+    @pytest.mark.skip("Gene conversion fraction QC not done yet")
+    @pytest.mark.parametrize(
+        ["name", "gene_conversion_fraction"],
+        $chromosome_rate_dict.items())
+    def test_chromosome_gene_conversion_fraction(self, name, gene_conversion_fraction):
+        assert gene_conversion_fraction ==
+            self.genome.get_chromosome(name).gene_conversion_fraction
 """
 )
 

tests/test_StrAga.py

@@ -49,3 +49,14 @@ def test_mutation_rate(self, name, rate):
     @pytest.mark.parametrize("chrom", [chrom for chrom in genome.chromosomes])
     def test_chromosome_ploidy(self, chrom):
         assert chrom.ploidy == 1
+
+    @pytest.mark.skip("QC for gene conversion not done yet")
+    @pytest.mark.parametrize(
+        ["name", "length"],
+        {"1": -1}.items(),
+    )
+    def test_gene_conversion_length(self, name, length):
+        assert self.genome.get_chromosome(name).gene_conversion_length == length
+
+    def test_bacterial_recombination(self):
+        assert self.genome.bacterial_recombination is True