test: 🧪 Improve tests

.talismanrc

@@ -1,10 +1,6 @@
 fileignoreconfig:
-  - filename: poetry.lock
-    checksum: cd28f1624109b324f71193134fda3e5911a9a09b0a5eae6c051ad5a5fe8514c4
+  - filename: tests/test_main.py
+    checksum: 32b65cc89ae6fa4a65749ad4ee0caa968f23cbe1b496ba459ff0889c1b623204
   - filename: tests/test_utils.py
-    checksum: ec76f44541d839e53b29168e29923d8c309720e53d7769da4b28eba7c1b7ce37
-  - filename: process_dcm/utils.py
-    checksum: 111741bfb41dd02c6fb8538bdf18baffbcb89c91e7714bc32d4ae0a8b2b607e3
-  - filename: README.md
-    checksum: ba2a6e5e3819c42a17ffb252a63f8841658eff651eab4915da0613f9d87debd5
+    checksum: a90ae4e646379b7626df33707759945bf62df2bd3e504ef82c9d1615d6dbb888
 version: ""

tests/test_main.py

@@ -87,6 +87,17 @@ def test_main(md5, meta, keep, janitor, runner):
         assert get_md5(of) in md5
 
 
+def test_main_dummy(janitor, runner):
+    janitor.append("dummy_dir")
+    args = ["tests/dummy_ex", "-o", "dummy_dir", "-k", "p"]
+    result = runner.invoke(app, args)
+    assert result.exit_code == 0
+    of = sorted(glob("dummy_dir/**/*"))
+    assert len(of) == 2
+    assert get_md5("dummy_dir/dummy_ex/metadata.json") == "1cabdb14492a0e62d80cfc0a3fe304e9"
+    assert get_md5(of) in "b19bbfca59584915295f67e9259880d7"
+
+
 def test_main_mapping(janitor, runner):
     janitor.append("patient_2_study_id.csv")
     with TemporaryDirectory() as tmpdirname:

tests/test_utils.py

@@ -266,6 +266,8 @@ def test_process_dcm(temp_output_dir, input_dir2, mocker):
 
 
 def test_process_dcm_dummy(temp_output_dir):
-    new_patient_key, original_patient_key = process_dcm(input_dir="tests/", output_dir=temp_output_dir, overwrite=True)
+    new_patient_key, original_patient_key = process_dcm(
+        input_dir="tests/dummy_ex", output_dir=temp_output_dir, overwrite=True
+    )
     assert new_patient_key, original_patient_key == ("2375458543", "123456")
     assert get_md5(os.path.join(temp_output_dir, "metadata.json")) == "3ec329aacc807f470426d1b3706669fc"