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National Microbiology Laboratory

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  1. mob-suite mob-suite Public

    MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

    Python 128 32

  2. staramr staramr Public

    Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

    Python 127 28

  3. ecoli_serotyping ecoli_serotyping Public

    In silico prediction of E. coli serotype

    Python 51 11

  4. irida irida Public

    Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

    Java 40 31

  5. refseq_masher refseq_masher Public

    Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database

    Jupyter Notebook 40 4

  6. sistr_cmd sistr_cmd Public

    SISTR (Salmonella In Silico Typing Resource) command-line tool

    Python 26 9

Repositories

Showing 10 of 144 repositories
  • irida-next Public

    IRIDA Next

    phac-nml/irida-next’s past year of commit activity
    Ruby 9 Apache-2.0 3 15 8 Updated Jan 21, 2025
  • irida Public

    Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

    phac-nml/irida’s past year of commit activity
    Java 40 Apache-2.0 31 169 8 Updated Jan 21, 2025
  • viralassembly Public

    Assemble and QC viral reads with a reference scheme

    phac-nml/viralassembly’s past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Jan 20, 2025
  • legiovue Public

    A nextflow pipeline for whole-genome analysis of *Legionella pneumophila*

    phac-nml/legiovue’s past year of commit activity
    Nextflow 0 MIT 1 5 1 Updated Jan 20, 2025
  • wade Public

    WGS Analysis and Detection of Molecular Markers (WADE)

    phac-nml/wade’s past year of commit activity
    R 5 Apache-2.0 3 1 1 Updated Jan 17, 2025
  • wade-data Public

    Data for WGS Analysis and Detection of Molecular Markers (WADE)

    phac-nml/wade-data’s past year of commit activity
    1 Apache-2.0 0 0 0 Updated Jan 17, 2025
  • fastmatchirida Public

    Quickly refines a reference set of samples based on distance.

    phac-nml/fastmatchirida’s past year of commit activity
    Nextflow 1 MIT 0 0 0 Updated Jan 17, 2025
  • phac-nml/schedule-pipelines’s past year of commit activity
    Python 0 0 1 0 Updated Jan 17, 2025
  • irida-plugin-sistr Public

    IRIDA Plugin for SISTR Salmonella Typing Tool

    phac-nml/irida-plugin-sistr’s past year of commit activity
    Java 0 0 2 0 Updated Jan 17, 2025
  • arboratornf Public

    EPS suite Arborator pipeline

    phac-nml/arboratornf’s past year of commit activity
    Nextflow 0 MIT 0 3 0 Updated Jan 15, 2025

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