This image facilitates the usage of auto-p2docking, a pipeline maker for protein-protein docking studies.
An online manual is available here.
You should adapt and run the following command: docker run --rm -v /your/data/dir:/data -v /var/run/docker.sock:/var/run/docker.sock pegi3s/auto-p2docking
In this command, you should replace /your/data/dir to point to the directory that contains the input files of the pipeline.
Please note that you must have a pipeline and a config file under /your/data/dir in order for the program to work. Detailed instructions are given in the online manual, where the available modules, as well as the parameters that must be declared for each module, are described in detail.
Protocols are available that can be used both as inspiration to develop useful and efficient pipelines, as well as test data. By declaring in the first line of the pipeline file "protocol_description" a full list of the available protocols will be produced. By declaring the name of protocols (one per line, starting at the first line) in the pipeline file, the data for the corresponding protocol will be downloaded to the working directory.