lint

Update vignette source files and precompile.R #337

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10 warnings

file=R/add_phylopic_base.r,line=114,col=1,[cyclocomp_linter] Functions should have cyclomatic complexity of less than 15, this has 110.

file=R/add_phylopic_base.r,line=145,col=24,[vector_logic_linter] Conditional expressions require scalar logical operators (&& and ||)

file=R/add_phylopic_base.r,line=207,col=4,[commented_code_linter] Commented code should be removed.

file=R/add_phylopic_base.r,line=209,col=4,[commented_code_linter] Commented code should be removed.

file=R/add_phylopic_base.r,line=224,col=1,[trailing_whitespace_linter] Trailing whitespace is superfluous.

file=R/add_phylopic_base.r,line=228,col=1,[trailing_whitespace_linter] Trailing whitespace is superfluous.

file=R/add_phylopic_base.r,line=256,col=1,[trailing_whitespace_linter] Trailing whitespace is superfluous.

file=R/add_phylopic_base.r,line=284,col=10,[indentation_linter] Indentation should be 12 spaces but is 10 spaces.

file=R/add_phylopic_base.r,line=299,col=1,[trailing_whitespace_linter] Trailing whitespace is superfluous.

file=R/add_phylopic_legend.R,line=7,col=72,[trailing_whitespace_linter] Trailing whitespace is superfluous.