Repositories list

• event-pdf

  Public
  Generates the Reactome book

  Java

  •

  GNU Affero General Public License v3.0

  •1•1•0•0•Updated Jan 28, 2025Jan 28, 2025

• reactome_chatbot

  Public
  This is Reactomes chatbot to its database and search index

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Jan 28, 2025Jan 28, 2025

• analysis-core

  Public
  Pathway enrichment and expression analysis as well as species comparison tool

  Java

  •6•3•1•0•Updated Jan 27, 2025Jan 27, 2025

• PathwayBrowser

  Public
  TypeScript

  •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• graph-core

  Public
  Models the Reactome knowledgebase into a interconnected graph

  Java

  •7•17•2•1•Updated Jan 27, 2025Jan 27, 2025

• release-verifier-lib

  Public
  A library of common functions for verifying release steps have run successfully

  Java

  •0•0•0•0•Updated Jan 26, 2025Jan 26, 2025

• ngx-reactome-base

  Public
  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Jan 24, 2025Jan 24, 2025

• pwp-gxa

  Public
  GWT wrapper for the Gene Expression Atlas widget

  Java

  •0•0•0•1•Updated Jan 24, 2025Jan 24, 2025

• pwp-model

  Public
  Data model shared accross the widgets and browser

  Java

  •

  Apache License 2.0

  •4•1•0•0•Updated Jan 23, 2025Jan 23, 2025

• server-java-utils

  Public
  Server side utilities shared across different projects

  Java

  •

  Apache License 2.0

  •2•0•0•0•Updated Jan 23, 2025Jan 23, 2025

• pwp-analysis-client

  Public
  Java

  •2•2•0•1•Updated Jan 23, 2025Jan 23, 2025

• reactome-parent

  Public
  1•0•0•1•Updated Jan 23, 2025Jan 23, 2025

• release-download-directory

  Public
  Data-release-pipeline: Generation of files for the Reactome website download directory

  releasedata-release-pipelinemysql-release

  Java

  •1•0•10•1•Updated Jan 22, 2025Jan 22, 2025

• release-jenkins-utils

  Public
  Data-release-pipeline: Utilities repository that contains files for initializing Release via Jenkins and general-use scripts used in Release

  releasedata-release-pipeline

  Groovy

  •1•0•5•0•Updated Jan 22, 2025Jan 22, 2025

• sbml-exporter

  Public
  Java

  •1•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• fireworks-layout

  Public
  Custom radial layout algorithm to visualise Reactome pathways in a space-filling graph

  visualisationradial-layoutpathways+ 2pathways-overviewreactome-pathway

  Java

  •3•1•1•0•Updated Jan 22, 2025Jan 22, 2025

• diagram-converter

  Public
  Generates a set of JSON files to be consumed by the Diagram Viewer

  Java

  •3•1•0•0•Updated Jan 22, 2025Jan 22, 2025

• statistics-generator

  Public
  Cypher queries to generate automatically release statistics

  R

  •

  MIT License

  •0•1•2•0•Updated Jan 22, 2025Jan 22, 2025

• release-biomodels

  Public
  Data-release-pipeline: Insertion of BioModels identifiers cross-references (data generated by https://github.com/reactome/biomodels-mapper) for Pathway instances

  releasedata-release-pipelinemysql-release

  Java

  •1•0•2•0•Updated Jan 22, 2025Jan 22, 2025

• data-export

  Public
  Creates the files to be placed in the download section

  Java

  •2•2•2•1•Updated Jan 20, 2025Jan 20, 2025

• CuratorTool

  Public
  The Reactome Java API for the relational database and the Curator Tool

  Java

  •7•3•11•5•Updated Jan 19, 2025Jan 19, 2025

• content-service

  Public
  The new Reactome REST API to access the data

  Java

  •5•9•1•1•Updated Jan 16, 2025Jan 16, 2025

• interactors-core

  Public
  Java

  •2•0•0•0•Updated Jan 16, 2025Jan 16, 2025

• curation-statistics

  Public
  Java

  •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

• graph-add-links

  Public
  Java

  •0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

• Pathway-Exchange

  Public
  Pathway Exchange Code Repository

  Java

  •1•0•2•0•Updated Dec 24, 2024Dec 24, 2024

• pwp-browser

  Public
  A tool for visualising and interacting with pathways data

  Java

  •7•10•0•0•Updated Dec 20, 2024Dec 20, 2024

• release_gocam

  Public
  This pipeline generates go-cam ttl files from biopax and validates them

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

• data-content

  Public
  Java

  •2•1•0•0•Updated Dec 11, 2024Dec 11, 2024

• release-data-exporter

  Public
  Data-release-pipeline: Data exports for submission to NCBI, UCSC, and Europe PMC

  exporterreleaseneo4j-release+ 1data-release-pipeline

  Java

  •0•1•2•0•Updated Dec 10, 2024Dec 10, 2024