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@niu-lab Beifang Niu's Lab

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    24 repositories

    • msisensor2

      Public
      Microsatellite instability (MSI) detection for tumor only data.
      R
      •
      GNU General Public License v3.0
      •21•94•38•0•Updated Apr 23, 2024Apr 23, 2024

    • msisensor2-py

      Public
      Microsatellite instability (MSI) detection tool of python version for tumor only data .
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 27, 2024Mar 27, 2024

    • DIVIS

      Public
      integrated and customisable pipeline of cancer genome sequencing analysis
      Perl
      •2•3•1•0•Updated Feb 23, 2021Feb 23, 2021

    • msisensor-ct

      Public
      Microsatellite instability (MSI) detection for cfDNA samples.
      Makefile
      •
      GNU General Public License v3.0
      •3•17•8•0•Updated Feb 20, 2021Feb 20, 2021

    • docker-flt3-itd

      Public
      Python
      •
      GNU General Public License v3.0
      •0•6•1•0•Updated Feb 15, 2021Feb 15, 2021

    • gclust

      Public
      genome sized sequences clustering
      parallel-computingmetagenomicsclustering-methodsbacterial-genomes
      C++
      •
      Apache License 2.0
      •3•13•4•0•Updated Dec 29, 2020Dec 29, 2020

    • msisensor

      Public
      microsatellite instability detection using tumor only or paired tumor-normal data
      C++
      •
      MIT License
      •55•5•0•0•Updated Sep 3, 2019Sep 3, 2019

    • hotspot3d

      Public
      3D hotspot mutation proximity analysis tool
      Perl
      •
      GNU General Public License v3.0
      •25•0•0•0•Updated Aug 22, 2019Aug 22, 2019

    • GPyFlow-CLI

      Public
      a light way to run workflow
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 10, 2019Jun 10, 2019

    • GPyFlow-Workflows

      Public
      a workflow platform to share workflow
      CSS
      •0•0•0•0•Updated Apr 17, 2019Apr 17, 2019

    • hcp547

      Public
      杂交捕获测序pannel数据分析流程
      Dockerfile
      •0•0•0•0•Updated Feb 20, 2019Feb 20, 2019

    • GPyFlow-Visual

      Public
      edit workflow on web browser
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Jan 22, 2019Jan 22, 2019

    • MuSiC2

      Public
      identifying mutational significance in cancer genomes
      Perl
      •
      MIT License
      •20•0•0•0•Updated Dec 3, 2018Dec 3, 2018

    • MetaGeneConsensus

      Public
      C
      •
      MIT License
      •1•1•0•0•Updated Nov 9, 2018Nov 9, 2018

    • VarDictCpp

      Public
      This is a implementation of VarDictJava with C++.
      0•0•0•0•Updated Nov 7, 2018Nov 7, 2018

    • calcRoiCovg

      Public
      C
      •
      MIT License
      •1•0•0•0•Updated Oct 24, 2018Oct 24, 2018

    • LarGo

      Public
      Large Scale Genome assembler
      C++
      •0•0•0•0•Updated Oct 10, 2018Oct 10, 2018

    • Niu-Lab_Web-Portal

      Public
      Creating initial version of our lab's web portal.
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 14, 2018Sep 14, 2018

    • pindel

      Public
      Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
      C++
      •
      GNU General Public License v3.0
      •90•0•0•0•Updated Sep 3, 2018Sep 3, 2018

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.3k•0•0•0•Updated Jul 26, 2018Jul 26, 2018

    • PTRBC

      Public
      Perl
      •1•1•0•0•Updated Jun 4, 2018Jun 4, 2018

    • LarGo-annotator

      Public
      Large Scale Genome Annotator
      Perl
      •0•0•0•0•Updated Sep 21, 2017Sep 21, 2017

    • joinx

      Public
      a tool for processing .bed and .vcf files
      C++
      •11•0•0•0•Updated Apr 25, 2017Apr 25, 2017

    • fr-hit

      Public
      C++
      •
      MIT License
      •4•0•0•0•Updated Sep 13, 2013Sep 13, 2013