Repositories list

• algorithm_vxdetector

  Public
  predict variable region from amplicon sequences

  Python

  •1•0•0•3•Updated Feb 4, 2025Feb 4, 2025

• rust-debruijn

  Public
  De Bruijn graphs in Rust

  Rust

  •

  MIT License

  •17•0•0•0•Updated Feb 4, 2025Feb 4, 2025

• gapc

  Public
  Bellman's GAP compiler

  C++

  •

  GNU General Public License v3.0

  •6•7•19•10•Updated Jan 24, 2025Jan 24, 2025

• microbiome_kraemer_touchingsurfaces

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

• marbel

  Public
  Python

  •

  Apache License 2.0

  •0•0•4•1•Updated Jan 16, 2025Jan 16, 2025

• dataCharacteristics

  Public
  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Jan 15, 2025Jan 15, 2025

• teaching_MS-MO-ABS

  Public
  MS-MO-ABS teaching material

  Jupyter Notebook

  •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

• sepp

  Public
  Ensemble of HMM methods (SEPP, TIPP, UPP)

  Python

  •

  GNU General Public License v3.0

  •38•0•0•3•Updated Nov 25, 2024Nov 25, 2024

• phylofiller

  Public
  PhyloFiller

  Python

  •

  GNU General Public License v3.0

  •1•0•1•2•Updated Nov 19, 2024Nov 19, 2024

• InSilicoSeq

  Public
  🚀 A sequencing simulator

  Python

  •

  MIT License

  •34•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• microbiome_benga_hostgenotype

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

• qiita-keycloak

  Public
  containerized keycloak configuration

  Shell

  •0•0•1•2•Updated Aug 20, 2024Aug 20, 2024

• fold-grammars

  Public
  Collection of bgap code for RNA folding

  Perl

  •

  GNU General Public License v3.0

  •5•3•4•7•Updated Aug 12, 2024Aug 12, 2024

• bellmanscafe

  Public
  Interactive GAPc Website

  Python

  •2•0•12•2•Updated Jul 11, 2024Jul 11, 2024

• qiita

  Public
  Qiita - A multi-omics databasing effort

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •80•0•0•2•Updated Jun 21, 2024Jun 21, 2024

• ADP_collection

  Public
  Collection of various ADP problem implementation

  GAP

  •0•0•0•3•Updated May 29, 2024May 29, 2024

• qiita-files

  Public
  File formats defined for Qiita and Qiita plugins internal use

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •4•0•0•0•Updated Mar 22, 2024Mar 22, 2024

• qp-dbbact

  Public
  Python

  •0•0•1•3•Updated Mar 12, 2024Mar 12, 2024

• qtp-sequencing

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •8•0•0•1•Updated Feb 15, 2024Feb 15, 2024

• gapc-test-suite

  Public
  Additional test data for "Bellman's GAP" (gapc)

  GAP

  •0•0•1•0•Updated Jan 12, 2024Jan 12, 2024

• microbiome_Tinganelli_flash

  Public
  Ultra-High Dose Rate (FLASH) SOBP Carbon Ion Irradiation: First in vivo Results

  Jupyter Notebook

  •0•0•0•0•Updated Nov 6, 2023Nov 6, 2023

• workflow_tuRNAble

  Public
  assess folding space changes for RNA sequence changes

  Python

  •0•0•0•0•Updated Sep 29, 2023Sep 29, 2023

• teaching_V-BI-BSA

  Public
  Jupyter Notebook

  •1•0•2•0•Updated Dec 15, 2022Dec 15, 2022

• algorithm_traits_microbiome

  Public
  Use traits of bacterial isolated to infer microbioal community properties

  R

  •0•0•0•5•Updated Nov 3, 2022Nov 3, 2022

• FlowSoFineApp

  Public
  R

  •0•0•2•1•Updated May 14, 2022May 14, 2022

• FlowSoFine

  Public
  R

  •

  GNU General Public License v3.0

  •0•1•4•0•Updated Mar 8, 2022Mar 8, 2022

• microbiome_apostolopoulos_dogs

  Public
  Description and comparison of the skin and ear canal microbiota of non-allergic and allergic German shepherd dogs using next generation sequencing

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 3, 2021Nov 3, 2021

• gapc-cafe

  Public
  Bellman's cafe, i.e. interactive web pages to explore gapc instances

  TeX

  •0•0•0•0•Updated Apr 7, 2021Apr 7, 2021

• microbiome_pax5

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Aug 26, 2020Aug 26, 2020

• funant

  Public
  fungal annotation tool

  MIT License

  •0•0•0•0•Updated Jul 7, 2020Jul 7, 2020