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    9 repositories

    • PAModelpy

      Public
      Repository for source code of the PAModelpy package
      Jupyter Notebook
      •
      MIT License
      •1•3•0•0•Updated Sep 26, 2024Sep 26, 2024

    • Opol-GSMM

      Public
      Genome scale metabolic model for Ogataea polymorpha NCYC495.
      biotechnologygenome-scale-modelssystem-biologygenome-scale-modelingstandard-gem
      HTML
      •
      Other
      •0•2•0•0•Updated Aug 27, 2024Aug 27, 2024

    • BioLabSim

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•3•Updated Apr 12, 2024Apr 12, 2024

    • Ustilago_maydis-GEM

      Public
      The genome scale metabolic model iUma22 for Ustilago maydis
      HTML
      •
      Creative Commons Attribution 4.0 International
      •1•1•0•0•Updated Apr 10, 2024Apr 10, 2024

    • yeast-GEM-iAMBvolatiles

      Public
      The consensus GEM for Saccharomyces cerevisiae. Added with volatiles from the iAMB.
      MATLAB
      •
      Creative Commons Attribution 4.0 International
      •46•0•0•0•Updated May 25, 2023May 25, 2023

    • RWTH-QMB1

      Public
      Jupyter Notebook
      •0•0•0•1•Updated Jun 22, 2022Jun 22, 2022

    • Exp2Ipynb

      Public
      Exp2Ipynb is a collection of Python Jupyter Notebooks for the analysis of gene expression. The input is a library of sequences with equal length mapped to associated expression strength.
      TeX
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 9, 2022Jun 9, 2022

    • Tutorial_GEM_and-_FBA

      Public
      Tutorial for simulation of constraint based models with CobraPy.
      Jupyter Notebook
      •1•1•0•0•Updated Nov 11, 2020Nov 11, 2020

    • PathwayToolsAnnotationParser

      Public
      Matlab script that parses files exported from Pathway Tools for common annotations in order to complete models created with the COBRA Toolbox. This script finds those annotations that the COBRA parses misses. Before invoking the script, make sure to have imported your model of interest from a Pathway Tools SMBL file with COBRA first.
      M
      •0•0•0•0•Updated Aug 1, 2014Aug 1, 2014