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@colomemaria Colome lab

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    13 repositories

    • community-paper

      Public
      Jupyter Notebook
      •0•1•3•0•Updated Oct 8, 2024Oct 8, 2024

    • epiAneufinder

      Public
      R package to detect breakpoints and assign somies to scATAC-seq data
      HTML
      •
      GNU General Public License v3.0
      •7•33•10•1•Updated Sep 10, 2024Sep 10, 2024

    • benchmark_scrnaseq_cnv_callers

      Public
      Analysis pipeline used to benchmark scRNA-seq copy number variant callers
      R
      •
      MIT License
      •0•3•0•0•Updated Aug 30, 2024Aug 30, 2024

    • community

      Public
      cell-cell communication algorithm
      R
      •
      MIT License
      •4•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • epiScanpy

      Public
      Episcanpy: Epigenomics Single Cell Analysis in Python
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •33•141•24•2•Updated May 1, 2024May 1, 2024

    • scSwitchFilter

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 11, 2024Mar 11, 2024

    • ARID1A_follicular_lymphoma

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Dec 11, 2023Dec 11, 2023

    • epiAneufinder_analyses

      Public
      Scripts and notebooks describing the analyses and plots that included in the epiAneufinder publication
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Nov 9, 2023Nov 9, 2023

    • scmoib-package

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 27, 2022Apr 27, 2022

    • episcanpy_doc

      Public
      0•0•0•0•Updated Sep 5, 2021Sep 5, 2021

    • episciny_doc

      Public
      0•0•0•0•Updated Jun 21, 2021Jun 21, 2021

    • colomemaria.github.io

      Public
      0•0•0•0•Updated Jun 21, 2021Jun 21, 2021

    • episcanpy-paper

      Public
      Jupyter Notebook
      •3•9•0•0•Updated Feb 26, 2021Feb 26, 2021