Repositories list

• landau

  Public
  Use analogy with Landau theory of phase transitions to look for critical transitions in data.

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Nov 18, 2024Nov 18, 2024

• Synthetic-RNA-maps

  Public
  Creating synthetic RNA expression data to test control kernel ideas

  Jupyter Notebook

  •0•0•2•0•Updated Nov 15, 2024Nov 15, 2024

• honey-bee-behavior

  Public
  Analysis of honey bee collective behavior data

  Jupyter Notebook

  •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

• Neet

  Public
  Simulating and analyzing dynamical network models

  Python

  •

  Other

  •10•0•3•0•Updated Oct 29, 2024Oct 29, 2024

• BoolODE

  Public
  Git Repo for simulating Boolean Models

  Python

  •

  GNU General Public License v3.0

  •16•0•0•0•Updated Oct 18, 2024Oct 18, 2024

• laplace-decisions

  Public
  Goal: build a computational model of decision-making that matches with the Laplace transform picture of Howard et al. 2018 and is implemented using believable neural dynamics.

  Jupyter Notebook

  •0•0•0•0•Updated May 30, 2024May 30, 2024

• SloppyCell

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •6•0•0•0•Updated Apr 30, 2024Apr 30, 2024

• InfEst

  Public
  A Python library for estimating information measures from data

  Python

  •

  MIT License

  •0•1•0•0•Updated Oct 27, 2023Oct 27, 2023

• AttAttach

  Public
  A python package to generate the attractor landscape of a Boolean network with given number and types of attractors.

  Jupyter Notebook

  •1•0•0•0•Updated Oct 24, 2023Oct 24, 2023

• velocyto.py

  Public
  RNA velocity estimation in Python

  Python

  •

  BSD 2-Clause "Simplified" License

  •83•0•0•0•Updated Feb 8, 2023Feb 8, 2023