Repositories list

• cidc-schemas

  Public
  CIDC Metadata Schemas

  Python

  •

  MIT License

  •3•2•0•1•Updated Mar 20, 2024Mar 20, 2024

• cidc-ngs-pipeline-api

  Public
  Specifications and documentation related to CIMAC-CIDC NGS pipelines: WES, RNAseq, TCRseq, ATACseq

  Python

  •4•3•0•1•Updated Mar 20, 2024Mar 20, 2024

• cidc-ui

  Public
  CIDC Data Portal UI

  TypeScript

  •2•0•0•17•Updated Oct 4, 2023Oct 4, 2023

• cidc-api-gae

  Public
  The CIDC API, running on Google App Engine and Google Cloud SQL

  Python

  •

  MIT License

  •2•0•0•1•Updated Aug 16, 2023Aug 16, 2023

• cidc-cloud-functions

  Public
  Google Cloud Functions for carrying out event-driven tasks in the CIDC

  Python

  •

  MIT License

  •1•0•2•3•Updated Jul 15, 2023Jul 15, 2023

• cidc_wes

  Public
  Python

  •0•0•0•0•Updated Jun 21, 2023Jun 21, 2023

• cidc-cli

  Public
  Command line tool for transferring data files to/from the CIDC.

  Python

  •

  MIT License

  •1•2•0•1•Updated May 22, 2023May 22, 2023

• RIMA_automator

  Public
  Python

  •1•0•0•1•Updated Mar 15, 2023Mar 15, 2023

• cidc_rima

  Public
  R

  •1•0•0•0•Updated Feb 16, 2023Feb 16, 2023

• cidc-visualizIRR

  Public
  HTML

  •0•0•0•0•Updated Dec 15, 2022Dec 15, 2022

• wes_automator

  Public
  Python

  •0•0•1•0•Updated Nov 2, 2022Nov 2, 2022

• cidc-documentation

  Public
  3•0•0•0•Updated Oct 27, 2022Oct 27, 2022

• wes_errorGen

  Public
  Python

  •0•0•0•0•Updated Sep 27, 2022Sep 27, 2022

• chips_automator

  Public
  Python

  •0•0•0•0•Updated Sep 27, 2022Sep 27, 2022

• cidc_chips

  Public
  Python

  •0•0•0•0•Updated Sep 27, 2022Sep 27, 2022

• cidc-pipelines

  Public archive
  A repo for tracking the versions and composition of CIDC pipelines

  0•1•0•0•Updated Jul 26, 2019Jul 26, 2019

• cidc-utils

  Public archive
  A simple utility package for the CIDC tools, provides convenient shortcut methods for some of the common tasks.

  Python

  •

  MIT License

  •0•0•0•0•Updated May 29, 2019May 29, 2019

• cidc-api

  Public archive
  CIDC Application Program Interface (API)

  Python

  •

  MIT License

  •0•0•0•0•Updated May 28, 2019May 28, 2019

• cidc-taskmanager

  Public archive
  CIDC task manager for receiving messages and running tasks.

  Python

  •

  MIT License

  •0•0•0•0•Updated Apr 22, 2019Apr 22, 2019

• cidc-pipeline-prototype

  Public
  A placeholder pipeline written in Snakemake.

  Python

  •1•0•0•0•Updated Mar 12, 2019Mar 12, 2019

• cidc-portal

  Public archive
  Old repo; will soon be deleted.

  HTML

  •

  MIT License

  •0•0•0•0•Updated Jan 22, 2019Jan 22, 2019