Repositories list

• workflows-datirium

  Public
  CWL based Bioinformatics Workflows

  Common Workflow Language

  •

  Apache License 2.0

  •14•1•0•0•Updated Nov 4, 2024Nov 4, 2024

• workflows

  Public
  Community maintained workflows & tools (with examples)

  Common Workflow Language

  •62•6•0•0•Updated Oct 25, 2024Oct 25, 2024

• cwl-airflow

  Public
  Python package to extend Airflow functionality with CWL1.1 support

  workflowcontainerscommon-workflow-language+ 5cwldagcommonwlcwl-descriptorcwl-airflow

  Python

  •

  Apache License 2.0

  •32•185•14•2•Updated Oct 25, 2023Oct 25, 2023

• Lenti-STARR

  Public
  Shell

  •

  Apache License 2.0

  •1•1•0•0•Updated Feb 21, 2023Feb 21, 2023

• biowardrobe-ng

  Public
  BioWardrobe-NG

  CSS

  •1•2•0•18•Updated Dec 22, 2022Dec 22, 2022

• sc-seq-analysis

  Public
  CWL toolkit for single-cell sequencing data analysis

  workflowscrna-seqfair+ 8cwlsingle-cell10x10x-genomicsscatac-seqbioinformaticsrna-seq+ 1

  Common Workflow Language

  •

  Apache License 2.0

  •0•4•1•0•Updated Nov 11, 2022Nov 11, 2022

• visualization_plugins

  Public
  Set of utilities for interactive data visualization

  JavaScript

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 1, 2022Nov 1, 2022

• workflows_test

  Public
  Conformance test for Barski-lab/workflows

  AngelScript

  •0•1•0•0•Updated Apr 20, 2022Apr 20, 2022

• geep

  Public
  INPUT: sam, bam, gff, gtf, tab-delimited table annotations

  C++

  •

  MIT License

  •1•0•1•0•Updated Sep 14, 2020Sep 14, 2020

• biowardrobe-airflow-plugins

  Public
  Plugins for BioWardrobe Analysis

  TSQL

  •

  Apache License 2.0

  •1•1•3•1•Updated Jun 3, 2020Jun 3, 2020

• ga4gh_challenge

  Public
  Workflow for GA4GH/DREAM challenge (phase 2)

  cwl-workflowcwltoolcwl-airflow+ 7workflowpipelinega4ghcwlbiowardrobega4gh-challengedream-challenge

  Common Workflow Language

  •

  Apache License 2.0

  •5•3•0•1•Updated Jun 2, 2020Jun 2, 2020

• biowardrobe

  Public archive
  BioWardrobe: an integrated platform for analysis of epigenomics and transcriptomics data

  rna-seqbiologyepigenetics+ 3chip-seqsequence-alignmentngs-pipeline

  JavaScript

  •1•5•0•0•Updated Apr 29, 2020Apr 29, 2020

• SatScript

  Public
  Original SatScript.py from default R scripts (BioWardrobe)

  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated Sep 9, 2019Sep 9, 2019

• biowardrobe-airflow-advanced

  Public
  Advanced analysis from BioWardrobe

  Python

  •

  Apache License 2.0

  •0•0•1•0•Updated Sep 5, 2019Sep 5, 2019

• biowardrobe-airflow-analysis

  Public
  BioWardrobe's backend rewritten for Apache Airflow.

  biowardrobepythonairflow+ 2cwlcwltool

  TSQL

  •

  Apache License 2.0

  •2•5•0•0•Updated Sep 5, 2019Sep 5, 2019

• get-certificate

  Public
  Get certificate from https://letsencrypt.org/

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 27, 2019Jun 27, 2019

• ROSE

  Public
  Fork from ROSE (https://bitbucket.org/young_computation/rose/src/master/annotation/)

  Python

  •

  Other

  •0•1•1•0•Updated May 11, 2018May 11, 2018

• allele-project

  Public
  Projects allele specific alignments to reference genome

  Python

  •

  MIT License

  •0•0•0•0•Updated Apr 19, 2018Apr 19, 2018

• biowardrobe-analysis

  Public
  BioWardrobe basic and advanced analysis

  Python

  •0•0•1•0•Updated Feb 2, 2018Feb 2, 2018

• barski-lab.github.io

  Public
  0•0•0•0•Updated Oct 29, 2017Oct 29, 2017

• biowardrobe-ui

  Public
  transition frontend ui for biowardrobe

  JavaScript

  •0•0•0•0•Updated Oct 10, 2017Oct 10, 2017

• cwl-airflow-cli

  Public
  Python package to add and check the status of the submitted to Airflow jobs

  Python

  •

  MIT License

  •0•2•0•0•Updated Sep 16, 2017Sep 16, 2017

• incubator-airflow

  Public
  Apache Airflow (Incubating)

  Python

  •

  Apache License 2.0

  •14k•2•0•0•Updated Aug 2, 2017Aug 2, 2017

• refgene-sort

  Public
  Utility to sort refGene tab-delimited annotation files from Genome Browser (DB dumps)

  Python

  •0•0•0•0•Updated Jul 31, 2017Jul 31, 2017

• atdp

  Public
  BioWardrobe ATDP

  C++

  •0•0•0•0•Updated Jul 17, 2017Jul 17, 2017

• iaintersect

  Public
  BioWardrobe Iaintersect.

  C++

  •0•0•1•0•Updated Jun 11, 2017Jun 11, 2017

• ALEA_CWL_workflow

  Public
  1•0•0•0•Updated Aug 8, 2016Aug 8, 2016

• sra-interface

  Public
  TypeScript

  •1•0•0•0•Updated Jun 21, 2016Jun 21, 2016

• meteorgeo

  Public
  JavaScript

  •0•0•0•0•Updated Apr 15, 2016Apr 15, 2016

• bharath90-meteorgeo

  Public
  JavaScript

  •1•0•0•0•Updated Apr 14, 2016Apr 14, 2016