ALEA_CWL_workflow

ALEA - Common Workflow Language Wrapper for ALEA - CreateGenome, Alignreads and CreateTracks

Simple use case:

cwltool master-workflow.cwl master-workflow-job.yml

Name		Name	Last commit message	Last commit date
Latest commit History 16 Commits
README.md		README.md
alea-createGenome.cwl		alea-createGenome.cwl
alea-createGenome_new.cwl		alea-createGenome_new.cwl
alea-createTracks.cwl		alea-createTracks.cwl
alea-docker.yml		alea-docker.yml
append.cwl		append.cwl
awk_component.cwl		awk_component.cwl
awk_component2.cwl		awk_component2.cwl
bwa-align.cwl		bwa-align.cwl
bwa-docker.yml		bwa-docker.yml
bwa-samse.cwl		bwa-samse.cwl
cut.cwl		cut.cwl
envvar-global 1.yml		envvar-global 1.yml
envvar-global.yml		envvar-global.yml
master-workflow.cwl		master-workflow.cwl
paste.cwl		paste.cwl
sam_bam_sorted.cwl		sam_bam_sorted.cwl
samtools-docker.yml		samtools-docker.yml
samtools-metadata.yaml		samtools-metadata.yaml
samtools-sort.cwl		samtools-sort.cwl
samtools-view.cwl		samtools-view.cwl
workflow.cwl		workflow.cwl
workflow2.cwl		workflow2.cwl