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    • Library of generic Python AWS utils used by the AIBS Informatics "Marmot" team
      Python
      Other
      0110Updated Dec 23, 2024Dec 23, 2024
    • Library for AWS CDK Constructs related to AIBS Informatics Services
      Python
      Other
      0101Updated Dec 23, 2024Dec 23, 2024
    • Core library to be used as foundation across multiple projects
      Python
      Other
      0201Updated Dec 23, 2024Dec 23, 2024
    • AWS Lambda library for AIBS Informatics lambda functions
      Python
      Other
      0100Updated Dec 23, 2024Dec 23, 2024
    • Deep-Neurographs is a Python module that utilizes machine learning to detect and correct false splits in a predicted neuron segmentation.
      Jupyter Notebook
      MIT License
      0300Updated Dec 23, 2024Dec 23, 2024
    • Python
      Other
      0000Updated Dec 23, 2024Dec 23, 2024
    • Python package for analyzing behavioral data for Brain Observatory: Visual Behavior
      Jupyter Notebook
      Other
      622656Updated Dec 21, 2024Dec 21, 2024
    • An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.
      TypeScript
      BSD 3-Clause "New" or "Revised" License
      14606Updated Dec 21, 2024Dec 21, 2024
    • Python test utility package
      Python
      Other
      0100Updated Dec 21, 2024Dec 21, 2024
    • Tools for uploading and interacting with Mindscope Neuropixels experiments on Code Ocean
      Python
      2010Updated Dec 20, 2024Dec 20, 2024
    • scrattch

      Public
      Single cell RNA-seq analysis for transcriptomic type characterization
      R
      Other
      33100Updated Dec 20, 2024Dec 20, 2024
    • Allen Institute Taxonomy building R package
      HTML
      1191Updated Dec 20, 2024Dec 20, 2024
    • txtox

      Public
      Experiments to relate gene expression and anatomical location
      Jupyter Notebook
      0000Updated Dec 20, 2024Dec 20, 2024
    • Genearlized mapping scripts for RNA-seq and Patch-seq data
      R
      21081Updated Dec 20, 2024Dec 20, 2024
    • Notebooks for analyzing and generating figures for EM MC paper
      Jupyter Notebook
      Other
      0100Updated Dec 20, 2024Dec 20, 2024
    • ACE

      Public
      R Shiny app for comparison of annotations (e.g., cell type assignments)
      R
      Other
      1150Updated Dec 20, 2024Dec 20, 2024
    • MIES

      Public
      Multichannel Igor Electrophysiology Suite
      IGOR Pro
      Other
      9252898Updated Dec 20, 2024Dec 20, 2024
    • Pipelines and modules for processing optical physiology data
      Python
      Other
      59762Updated Dec 20, 2024Dec 20, 2024
    • Shared repo for EM connectomics and Array Tomography render based image processing modules
      Python
      BSD 2-Clause "Simplified" License
      414131Updated Dec 20, 2024Dec 20, 2024
    • Scripts, notebooks and plots that operate on NWB or NWB-like objects from `npc_sessions` in the cloud.
      Jupyter Notebook
      0000Updated Dec 20, 2024Dec 20, 2024
    • npc_mvr

      Public
      Tools for reading raw video data from MindScope Neuropixels experiments, compatible with data in the cloud.
      Python
      MIT License
      0000Updated Dec 20, 2024Dec 20, 2024
    • Tools for accessing, processing and presenting data from Dynamic Routing experiments.
      Jupyter Notebook
      0100Updated Dec 20, 2024Dec 20, 2024
    • Repository for storing prototype functionality implementations for the BKP
      Python
      Other
      41852Updated Dec 19, 2024Dec 19, 2024
    • Jupyter Notebook
      Other
      3000Updated Dec 19, 2024Dec 19, 2024
    • npc_lims

      Public
      Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.
      Python
      MIT License
      0030Updated Dec 19, 2024Dec 19, 2024
    • Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
      Jupyter Notebook
      Other
      2255134Updated Dec 19, 2024Dec 19, 2024
    • cplAE_MET

      Public
      Coupled autoencoder extension for MET analysis.
      Jupyter Notebook
      0100Updated Dec 19, 2024Dec 19, 2024
    • Repository to track training stages and regimens for visual behavior
      Python
      Other
      43140Updated Dec 19, 2024Dec 19, 2024
    • vis

      Public
      Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats
      TypeScript
      BSD 3-Clause "New" or "Revised" License
      0503Updated Dec 19, 2024Dec 19, 2024
    • Distributed training of multi-arm variational autoencoding networks
      Jupyter Notebook
      MIT License
      0100Updated Dec 18, 2024Dec 18, 2024