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Sample scores plot for humpback model #75

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27fb5df
Create main.yml
valentina-s Jan 10, 2021
fa105f7
Create script.py
valentina-s Jan 10, 2021
fa5a320
Update main.yml
valentina-s Jan 10, 2021
37334ab
Update main.yml
valentina-s Jan 10, 2021
22adade
Update main.yml
valentina-s Jan 10, 2021
ddfb701
Create manual.yml
valentina-s Jan 10, 2021
02b8ff7
Update main.yml
valentina-s Jan 10, 2021
a2101f4
Update script.py
valentina-s Jan 23, 2021
bd16c5b
Update main.yml
valentina-s Jan 23, 2021
afdd505
Filtering and decimating before saving spectrogram
valentina-s Jan 25, 2021
6d172c8
Update manual.yml
valentina-s Jan 25, 2021
f29bbdc
Update script.py
valentina-s Jan 25, 2021
de36f6f
Adding a way to backtrack to previous day
valentina-s Jan 25, 2021
9d5fd84
Create README.md
valentina-s Mar 30, 2021
a76669e
Update README.md
valentina-s Mar 30, 2021
f9d5b7d
Update README.md
valentina-s Mar 30, 2021
a0f4dae
Mostly cosmetic changes to manual workflow
Molkree Apr 7, 2021
256552e
Upload spectrogram
Molkree Apr 7, 2021
2775524
Combine both workflows into one
Molkree Apr 7, 2021
677f549
Delete main.yml
Molkree Apr 7, 2021
58c8455
Process last 10 files, not just the last one
Molkree Apr 13, 2021
5ef894c
Update workflow to upload all spectrograms
Molkree Apr 13, 2021
3fdd6e5
Fix for upload-artifact
Molkree Apr 13, 2021
d09625b
Process all files to see when it fails
Molkree Apr 13, 2021
b3eb82f
Fix OOM
Molkree Apr 14, 2021
62271a4
Fix comment
Molkree Apr 14, 2021
96e02b2
Update README.md
Molkree Apr 14, 2021
0b4e89e
Update to latest Python
Molkree Apr 14, 2021
d554f91
Update packages
Molkree Apr 14, 2021
2e81ac0
Merge pull request #1 from Molkree/main
valentina-s Apr 23, 2021
2df09a2
Merge pull request #2 from Molkree/update-python
valentina-s May 25, 2021
ab737b4
Add .gitignore
Molkree Jun 9, 2021
e78b9f9
Add pre-commit config
Molkree Jun 9, 2021
8b32fb5
Just trying to get timestamp for now
Molkree Jun 9, 2021
69e89a7
Rename for consistency
Molkree Jun 9, 2021
b62d30a
Download all files
Molkree Jun 9, 2021
6e31df6
Create file list
Molkree Jun 14, 2021
5120188
Fix extension and print file contents
Molkree Jun 14, 2021
45a1001
Create combined file
Molkree Jun 14, 2021
1b435f0
Install ffmpeg
Molkree Jun 14, 2021
ac1c373
Add sudo
Molkree Jun 14, 2021
3688cf1
Convert all files to .wav
Molkree Jun 14, 2021
ebe6a41
Fix path
Molkree Jun 14, 2021
33621a0
Do not append directory to output files
Molkree Jun 14, 2021
725143b
Update pre-commit hooks
Molkree Jun 14, 2021
e4e8861
Merge pull request #4 from Molkree/gitignore
valentina-s Jun 14, 2021
47382b8
Rename OOI processing script
Molkree Jun 14, 2021
570f4e8
Add Orcasoun processing script
Molkree Jun 14, 2021
268d853
Merge pull request #5 from Molkree/pre-commit
valentina-s Jun 14, 2021
98664ed
Create spectrograms on Orcasound data
Molkree Jun 14, 2021
85baf22
Install matplotlib
Molkree Jun 14, 2021
99f0032
Install scipy as well
Molkree Jun 14, 2021
c1e5b0f
Remove Time label from upper spectrogram
Molkree Jun 14, 2021
2f00393
Get rid of extra filelist
Molkree Jun 14, 2021
93ebdf0
Create spectrogram for combined file as well
Molkree Jun 14, 2021
154c4b6
Drop spectrogram for combined file
Molkree Jun 14, 2021
f7633bb
Simplify combined file creation
Molkree Jun 14, 2021
7b80c9d
Allow very unsafe operations
Molkree Jun 14, 2021
85bc845
Fix path
Molkree Jun 14, 2021
a11f4bb
Disable combined file for now
Molkree Jun 14, 2021
b1cab8c
Fix combined file
Molkree Jun 14, 2021
4106a97
Use `logging.info` instead of `print`
Molkree Jun 14, 2021
376e6b6
Change logging level
Molkree Jun 14, 2021
dac50a6
Another try
Molkree Jun 14, 2021
7db925f
import sys
Molkree Jun 14, 2021
03e86f8
Tweak logging appearance and add to OOI script
Molkree Jun 14, 2021
b13249b
Add flake8 config
Molkree Jun 16, 2021
6180e15
Add CI linting workflow
Molkree Jun 16, 2021
e150635
Merge pull request #21 from Molkree/flake8
valentina-s Jun 17, 2021
441bfda
[pre-commit.ci] pre-commit autoupdate
pre-commit-ci[bot] Jun 21, 2021
36f8c0c
Merge pull request #22 from Molkree/ci-linting
valentina-s Jun 21, 2021
aab3fcb
Merge pull request #24 from orcasound/pre-commit-ci-update-config
valentina-s Jun 21, 2021
39f4ed8
Update gitignore with standard Python stuff
Molkree Jun 27, 2021
09e8deb
Extract spectrogram creation into separate module
Molkree Jun 27, 2021
3814cea
Merge branch 'main' into orcasound-data
Molkree Jun 27, 2021
8358ff8
Fix flake8 error
Molkree Jun 27, 2021
bd0cff7
Remove CI from PRs
Molkree Jun 27, 2021
4b9acd9
Fix Orcasound workflow after changes
Molkree Jun 27, 2021
ec35014
Add caching
Molkree Jun 27, 2021
8e321df
Hardcode timestamp for now
Molkree Jun 27, 2021
991f8f1
Do not forget to remove the last file
Molkree Jun 27, 2021
89ef2d6
Remove stray print
Molkree Jun 27, 2021
0bc5b1d
Add colorbar
Molkree Jun 27, 2021
2c5ca9e
Convert files to `.wav` in Python
Molkree Jun 28, 2021
481ebcc
Move function
Molkree Jun 28, 2021
c0f927a
Modify workflow
Molkree Jun 28, 2021
65c6289
Fix silly mistake and create directories if needed
Molkree Jun 28, 2021
69bf528
Install ffmpeg manually
Molkree Jun 28, 2021
2c61420
Fix logging?
Molkree Jun 28, 2021
924ad27
Merge branch 'orcasound-data' of https://github.com/Molkree/orca-acti…
Molkree Jun 28, 2021
2a45b27
Merge pull request #26 from Molkree/scale-down-ci
valentina-s Jun 29, 2021
9023a4a
Merge pull request #6 from Molkree/orcasound-data
valentina-s Jun 29, 2021
9df353e
Add milliseconds to filenames
Molkree Jul 1, 2021
d7b7c30
[pre-commit.ci] pre-commit autoupdate (#28)
pre-commit-ci[bot] Jul 5, 2021
029a9a7
Merge pull request #27 from Molkree/fix-short-segments
valentina-s Jul 6, 2021
bfbab01
Use OOIPy (#29)
Molkree Jul 12, 2021
2aab15f
[pre-commit.ci] pre-commit autoupdate (#30)
pre-commit-ci[bot] Jul 13, 2021
b5f6521
[pre-commit.ci] pre-commit autoupdate (#34)
pre-commit-ci[bot] Jul 19, 2021
5ab875e
Create LICENSE (#33)
Molkree Jul 20, 2021
a54bd38
[pre-commit.ci] pre-commit autoupdate (#38)
pre-commit-ci[bot] Jul 26, 2021
1960a3f
Small fixes (#39)
Molkree Jul 26, 2021
daec704
Add some generic hooks (#40)
Molkree Jul 26, 2021
9a9fb43
[pre-commit.ci] pre-commit autoupdate (#42)
pre-commit-ci[bot] Aug 2, 2021
3f01bfb
ci: add pep8-naming plugin to flake8 (#43)
Molkree Aug 3, 2021
bcce8d4
ci: simplify CI (#44)
Molkree Aug 3, 2021
1473973
[pre-commit.ci] pre-commit autoupdate (#45)
pre-commit-ci[bot] Aug 9, 2021
3aab7a2
OOI inputs (#36)
Molkree Aug 16, 2021
91749cb
Add badge for tests. (#47)
valentina-s Aug 17, 2021
fb9edf6
test(spectrograms): compare np arrays, not files (#49)
Molkree Aug 17, 2021
106c32b
[pre-commit.ci] pre-commit autoupdate (#51)
pre-commit-ci[bot] Aug 23, 2021
c35039f
[pre-commit.ci] pre-commit autoupdate (#53)
pre-commit-ci[bot] Aug 30, 2021
8a98fd2
[pre-commit.ci] pre-commit autoupdate (#54)
pre-commit-ci[bot] Sep 13, 2021
2e666ba
[pre-commit.ci] pre-commit autoupdate (#55)
pre-commit-ci[bot] Sep 20, 2021
75dc44a
[pre-commit.ci] pre-commit autoupdate (#57)
pre-commit-ci[bot] Sep 27, 2021
b2f4800
docs: update README with latest changes (#50)
Molkree Oct 1, 2021
65de95f
[pre-commit.ci] pre-commit autoupdate (#59)
pre-commit-ci[bot] Oct 4, 2021
45efb83
[pre-commit.ci] pre-commit autoupdate (#60)
pre-commit-ci[bot] Oct 11, 2021
ddf6a94
fix(ci): stay on Python 3.9 due to SciPy bug (#62)
Molkree Nov 1, 2021
ef92b7f
[pre-commit.ci] pre-commit autoupdate (#61)
pre-commit-ci[bot] Nov 1, 2021
2efff8a
[pre-commit.ci] pre-commit autoupdate (#63)
pre-commit-ci[bot] Nov 8, 2021
1f3c130
ci: run on latest Python (#64)
Molkree Nov 8, 2021
5ec5201
[pre-commit.ci] pre-commit autoupdate (#66)
pre-commit-ci[bot] Nov 15, 2021
bf3923a
[pre-commit.ci] pre-commit autoupdate (#67)
pre-commit-ci[bot] Nov 22, 2021
b262df5
[pre-commit.ci] pre-commit autoupdate (#68)
pre-commit-ci[bot] Dec 6, 2021
6008be7
[pre-commit.ci] pre-commit autoupdate (#69)
pre-commit-ci[bot] Dec 27, 2021
b20f44c
ci: upper limit NumPy (#71)
Molkree Jan 1, 2022
1c83ebe
[pre-commit.ci] pre-commit autoupdate (#72)
pre-commit-ci[bot] Jan 3, 2022
c7c28ed
[pre-commit.ci] pre-commit autoupdate (#73)
pre-commit-ci[bot] Jan 31, 2022
28147b2
trying out gh pages deployment
Benjamintdk Feb 14, 2022
d59dc9a
added example of image and updated heading
Benjamintdk Feb 14, 2022
8ee4fb4
Merge branch 'orcasound:gh-pages' into gh-pages
Benjamintdk Mar 25, 2022
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7 changes: 7 additions & 0 deletions index.html
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
<!DOCTYPE html>
<html>
<body>
<h1>Humpback Detector Results</h1>
<img src="2020-11-03.png" alt="plot of humpback detections across time"/>
</body>
</html>