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1687 evidence loading missing genetics #16

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1687 evidence loading missing genetics #16

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c761d5c
Update evidence index with explicit type mappings
JarrodBaker Jul 8, 2022
3e748e1
Update evidence index settings file name
JarrodBaker Jul 8, 2022
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32 changes: 32 additions & 0 deletions scripts/ES/index_settings_evidence.json
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Original file line number Diff line number Diff line change
@@ -0,0 +1,32 @@
{
"mappings": {
"dynamic_templates": [
{
"nesteds": {
"match_mapping_type": "object",
"match": "facet_*",
"mapping": {
"type": "nested"
}
}
}
],
"properties": {
"oddsRatio": {
"type": "double"
},
"oddsRatioConfidenceIntervalLower": {
"type": "double"
},
"oddsRatioConfidenceIntervalUpper": {
"type": "double"
}
}
},
"settings": {
"index": {
"number_of_replicas": 0,
"number_of_shards": 5
}
}
}
2 changes: 1 addition & 1 deletion terraform_create_images/modules/posvm/scripts/load_all_data.sh
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Expand Up @@ -44,7 +44,7 @@ do
export ID='id'
export INDEX_NAME="${token}"
export INPUT="${full_folder}"
export INDEX_SETTINGS=$PREFIX_DATA/index_settings.json
export INDEX_SETTINGS=$PREFIX_DATA/index_settings_evidence.json

/tmp/load_json_esbulk.sh
done
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1 change: 1 addition & 0 deletions terraform_create_images/modules/posvm/scripts/load_data.sh
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Expand Up @@ -54,6 +54,7 @@ sudo chmod 555 load_json_esbulk.sh
sudo wget -O /tmp/data/index_settings.json https://raw.githubusercontent.com/opentargets/platform-etl-backend/master/elasticsearch/index_settings.json
sudo wget -O /tmp/data/index_settings_search_known_drugs.json https://raw.githubusercontent.com/opentargets/platform-etl-backend/master/elasticsearch/index_settings_search_known_drugs.json
sudo wget -O /tmp/data/index_settings_search.json https://raw.githubusercontent.com/opentargets/platform-etl-backend/master/elasticsearch/index_settings_search.json
sudo wget -O /tmp/data/index_settings_evidence.json https://raw.githubusercontent.com/opentargets/platform-etl-backend/master/elasticsearch/index_settings_evidence.json

export ES=${ELASTICSEARCH_URI}:9200
export PREFIX_DATA=/tmp/data/
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