feat(feature_matrix): extract features for gwas associations only #901
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✨ Context
This PR changes the
LocusToGeneFeatureMatrixStep
step to write only annotation for credible sets from GWAS. This is based on a conversation with @addramir, for now we are not planning to use this dataset for associations that don't have a L2G.Dataset:
gs://ot-team/irene/l2g/05112024/feature_matrix_filtered
The filter reduces the size of the dataset from 7Gb (103,256,085 rows) to 730Mb (18,991,756 rows). I haven't measured it, but the step is also significantly faster to generate.
The issue of the distance scores > 1 is also gone.
🛠 What does this PR implement
🙈 Missing
🚦 Before submitting
dev
branch?make test
)?poetry run pre-commit run --all-files
)?