feat: logic to generate Effector Gene List, and positives and negatives #929
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| name: Build and Push to Artifact Registry | |
| "on": | |
| push: | |
| branches: ["*"] | |
| tags: ["*"] | |
| env: | |
| PROJECT_ID: open-targets-genetics-dev | |
| REGION: europe-west1 | |
| GAR_LOCATION: europe-west1-docker.pkg.dev/open-targets-genetics-dev | |
| REPOSITORY: gentropy-app | |
| PYTHON_VERSION_DEFAULT: "3.10.8" | |
| jobs: | |
| build-push-artifact: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: "Checkout" | |
| uses: "actions/checkout@v3" | |
| - name: "auth" | |
| uses: "google-github-actions/auth@v2" | |
| with: | |
| credentials_json: "${{ secrets.SERVICE_ACCOUNT_KEY }}" | |
| - name: "Set up Cloud SDK" | |
| uses: "google-github-actions/setup-gcloud@v2" | |
| - name: "Use gcloud CLI" | |
| run: "gcloud info" | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: "Docker auth" | |
| run: |- | |
| gcloud auth configure-docker ${{ env.REGION }}-docker.pkg.dev --quiet | |
| - name: Quick Docker build (gentropy only, AMD64 only, with layer cache) | |
| uses: docker/build-push-action@v6 | |
| with: | |
| platforms: linux/amd64 | |
| push: true | |
| tags: "${{ env.GAR_LOCATION }}/${{ env.REPOSITORY }}/gentropy:${{ github.ref_name }}" | |
| context: . | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=max | |
| - name: Build and push gentropy image | |
| if: github.ref == 'refs/heads/dev' || startsWith(github.ref, 'refs/tags/v') | |
| uses: docker/build-push-action@v6 | |
| with: | |
| platforms: linux/amd64,linux/arm64 | |
| push: true | |
| tags: "${{ env.GAR_LOCATION }}/${{ env.REPOSITORY }}/gentropy:${{ github.ref_name }}" | |
| context: . | |
| - name: Build and push VEP image | |
| if: github.ref == 'refs/heads/dev' || startsWith(github.ref, 'refs/tags/v') | |
| uses: docker/build-push-action@v6 | |
| with: | |
| platforms: linux/amd64 | |
| push: true | |
| tags: "${{ env.GAR_LOCATION }}/${{ env.REPOSITORY }}/custom_ensembl_vep:${{ github.ref_name }}" | |
| context: . | |
| file: "src/vep/Dockerfile" | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION_DEFAULT }} | |
| - name: Install and configure Poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| installer-parallel: true | |
| - name: Build and push spark cluster dependencies | |
| run: | | |
| make build |