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Treatment optimization #1517

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wants to merge 117 commits into from
Closed

Treatment optimization #1517

wants to merge 117 commits into from

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aymanhab
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@aymanhab aymanhab commented Aug 4, 2024

Fixes issue #<issue_number>

Brief summary of changes

Testing I've completed

CHANGELOG.md (choose one)

  • no need to update because...
  • updated...

@aymanhab
GUI scaffold, little backend wiring yet falso add menu item for Model…
de7ffa3 
…PersonalizationAction and cascade menu item for JMP
@aymanhab
Use Java Vector to contain list of Tasks
a70a5bd
@aymanhab
dialogs to create and edit tasks, no serialization/editing
bf7e6c7
@aymanhab
add model under tasks and utilize list properties api to modify lists
961fc6a
@aymanhab
create/edit JMPTasks and JMPJoints and serialize to XML
7f1dc53
@aymanhab
Add in editing and serialization to file
27e00f2
@aymanhab
connect outputModelFile to underlying property
c1d28fe
@aymanhab
Fix layout AddEditJointPanel
47599b3
@aymanhab
Fix formatting/layout of dialgs and initialization of ui fro a joint …
7b48535 
…task.
@aymanhab
More layout improvements and handle task name change
026d82e
@aymanhab
Fix indexing bug on delete
7eb0410
@aymanhab
Handle deletion at top level dialog
2b449c9
@aymanhab
Fix deserialization into dialog from file
2033f5b
@aymanhab
Fix selections of lists so that Edit/delete are avaialable only on si…
d220be9 
…ngle selection, disabled otherwise
@aymanhab
Add panel for JMPBody tasks and fix layout/alignment
e1e594e
@aymanhab
Define and edit JMPBody tasks, they serialize and deserialize and edi…
bbc2110 
…t properly
@aymanhab
Propagate changes to output model name to the underlying tool
cfba8bd
@aymanhab
Implement delete of JMPBody tasks
fc9df40
@aymanhab
Support editing JMPBody boolean properties
2add45b
@aymanhab
Remove dead code
fcd5c11
@aymanhab
Fix list deletion of JMPTasks
d14716f
@aymanhab
Support cancel edit of JMPBody and JMPJoint tasks
76a4dcf
@aymanhab
Support cancel of JMP Task edit
b21fac5
@aymanhab
Fix task name of JMPBody if all defaults are accepted
909188b
@aymanhab
Update JMPTask gui to correspond to using JMP*Sets rather than lists
9c1c0c8
@aymanhab
Merge branch 'master' into finalize_jmp_gui
26a5779
@aymanhab
Upgrade to latest 4.4.1 opensim-core codebase
b8c9659
@aymanhab
UI for new Move markers layout, remove primary axis, also expose inpu…
6c08d87 
…t file name (not editable)
@aymanhab
Update README.md
776f81e 
Document the steps needed to install the GUI and backend into an existing OpenSim application
@aymanhab
Fix switching direction for move markers checkboxes also show model i…
be0b04b 
…nput file rather than model name on file restore from xml
@aymanhab
Add menu for treatment optimization
41dc21d
@aymanhab
Refine TrackingOptimizationAction and top leve panel
b88a5c0
@aymanhab
first draft of mock ui for team review
2a75f4a
@aymanhab
Cleanup back end of panels for the code to compile/run. Use 3 separat…
12efc10 
…e commands/Actions, one common panel with 3 modes
@aymanhab
Minor rearrangement and connect properties to dialog for settings panel
92dcb1d
@aymanhab
Wire more backend for settings panel and states coordinates list
00aa62a
@aymanhab
wire checkbox for solving for synergy vector and surrogate model
a7b4d44
@aymanhab
Wire controllers coordinate lists to ui front end
3b76f4b
@aymanhab
Fix serializaion of model file, first two panels now connected to und…
09564f4 
…erlying properties
@aymanhab
Support deserialization of first tab/general settings
a22befe
@aymanhab
Serialze/deserialize controllers
7883133
@aymanhab
Wire dialogs to Add CostTerm/ConstraintTerm buttons. Dialog populatio…
9baecd5 
…n from data is still missing
@aymanhab
Add/Edit/delete of cost terms, list of types correctly specialized fo…
dcac2b7 
…r mode. Selection of components not implemented yet.
@aymanhab
Populate tables for constraint terms
6dffc2f
@aymanhab
Create and test dialog to select coordinates within cost term definit…
2ca14c7 
…ion, test serialization
@aymanhab
support markers, muscles in cost terms, some cleanup.
9c2aa61
@aymanhab
initialize component list ui from property on entry
3a58f28
@aymanhab
Support constraint terms and their create/edit/delete as well as seri…
923c10e 
…alization, only coordinates, markers and muscles are functional as component types for both costs and constraints
@aymanhab
Remove debugging line
0ba746c
@aymanhab
parse and set max_allowable_error for cost terms, test serialization
52f888e
@aymanhab
Support max-min errors in constraint term editing, support maxError f…
ccd9e9c 
…or cost term editing, test serialization
@aymanhab
Support "load", loadList to select from in Cost/Constraint definition
0c13e39
@aymanhab
Connect to controller_list property for cost and constraint terms
86654fa
@aymanhab
Support reading controller list from commands sto file
2675146
@aymanhab
Update component list when editing type of cost or constraint term to…
95747b2 
… clear the list if component type is invalid for the cost/constraint term type
@aymanhab
Utilize and populate synergy_groups, test serialization
b227656
@aymanhab
Issue generic warning when option list for components is empty.
c75c98d
@aymanhab
Add remaining options for ComponentList, start populating from osimx
b42e106
@aymanhab
Support force and moment component types provided by osimx files
04a4cff
@aymanhab aymanhab closed this Sep 17, 2024
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@aymanhab