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visR 0.3.0
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@bailliem bailliem released this 24 Jun 18:37
v0.3.0
bf56f36

New functions

  • Highlight specific strata in survival plots using add_highlight().

  • Indicate quantiles in survival plots using add_quantiles().

  • Estimation of cumulative incidence in the presence of competing risks is now possible with estimate_cuminc(). The risk estimates can be plotted similarly to estimates from estimate_KM() using the visr() function.

  • Function Surv_CNSR() used the CDISC ADTTE conventions for the default values of the time and status indicators for time-to-event analyses. Of note, the status variable must be coded as 0/1 with 1 indicating an observation has been censored. (#391)

Breaking Changes

  • AlignPlots() has been renamed to align_plots().

Bug Fixes

  • Fix in get_pvalue() for estimate_KM() objects when data piped in with modifications (e.g. dplyr::filter(), dplyr::mutate()).

  • Fix in add_risktable() with estimates being assigned the incorrect label.

  • Review unit testing for estimate_KM(formula=) argument. (#399)

  • Fixed bug in define_theme(strata=). (#388)

  • Fix a discrepancy issue when saving survfit() call in estimate_KM(). (#365)

  • Added check for no class(x)== . (#358)

  • Fix the documentation of the S3 method visr(). (#301)

Other Updates

  • Stratifying variable names have been removed from legend in visr.survfit() figures, and the legend title now describes the stratifying variable(s). (#343)

  • The estimate_KM() function gains an experimental formula= argument. When the argument is used, the AVAL, CNSR, and strata arguments typically used to construct the formula are ignored. (#379)

  • add_risktable has a rowgutter argument to allow spacing between plot and risktables

  • The strata variable is now removed from the body of tableone() results. (#254)

  • The visr.survfit() function no longer warns about x-axis label when PARAM column not found in original data set. (#378)

  • The call saved in the estimate_KM() object has been updated to a quosure--ensuring the original function call can always be recalled.

  • define_theme()updated to ensure that only the strata present in the theme are displayed. (#388)

  • Removed the external dependency with the easyalluvial package. (#383)

  • Reduced the number of exported functions. (#381)

  • Improved documentation for visr() and other generic functions. (#301) (#357)

  • Unit testing updated where relevant to have 100% code coverage and function requirements tested.

  • The README page has been updated with additional examples. (#425)

  • lifecycle badges have been added at the function level to indicate functions that are still in experimental or questioning phases. (#398)

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