The process '/usr/share/miniconda3/condabin/mamba' failed with exit code 1

The process '/Users/runner/miniconda3/condabin/mamba' failed with exit code 1

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/.

/usr/share/miniconda3/lib/python3.12/site-packages/conda/base/context.py:200: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(

Mamba support is still experimental and can result in differently solved environments!

info libmamba ****************** Backtrace Start ****************** debug libmamba Loading configuration trace libmamba Compute configurable 'create_base' trace libmamba Compute configurable 'no_env' trace libmamba Compute configurable 'no_rc' trace libmamba Compute configurable 'rc_files' trace libmamba Compute configurable 'root_prefix' warning libmamba You have not set the root prefix environment variable. To permanently modify the root prefix location, either: - set the 'MAMBA_ROOT_PREFIX' environment variable - use the '-r,--root-prefix' CLI option - use 'mamba shell init ...' to initialize your shell (then restart or source the contents of the shell init script) Continuing with default value: "/usr/share/miniconda3" trace libmamba Get RC files configuration from locations up to HomeDir trace libmamba Configuration not found at '/home/runner/.mambarc' trace libmamba Configuration not found at '/home/runner/.mamba/mambarc.d' trace libmamba Configuration not found at '/home/runner/.mamba/mambarc' trace libmamba Configuration not found at '/home/runner/.mamba/.mambarc' trace libmamba Configuration not found at '/home/runner/.config/mamba/mambarc.d' trace libmamba Configuration not found at '/home/runner/.config/mamba/mambarc' trace libmamba Configuration not found at '/home/runner/.config/mamba/.mambarc' trace libmamba Configuration found at '/home/runner/.condarc' trace libmamba Configuration not found at '/home/runner/.conda/condarc.d'

trace libmamba Configuration not found at '/home/runner/.conda/condarc' trace libmamba Configuration not found at '/home/runner/.conda/.condarc' trace libmamba Configuration not found at '/home/runner/.config/conda/condarc.d' trace libmamba Configuration not found at '/home/runner/.config/conda/condarc' trace libmamba Configuration not found at '/home/runner/.config/conda/.condarc' trace libmamba Configuration not found at '/usr/share/miniconda3/.mambarc' trace libmamba Configuration not found at '/usr/share/miniconda3/condarc.d' trace libmamba Configuration not found at '/usr/share/miniconda3/condarc' trace libmamba Configuration found at '/usr/share/miniconda3/.condarc' trace libmamba Configuration not found at '/var/lib/conda/.mambarc' trace libmamba Configuration not found at '/var/lib/conda/condarc.d/' trace libmamba Configuration not found at '/var/lib/conda/condarc' trace libmamba Configuration not found at '/var/lib/conda/.condarc' trace libmamba Configuration not found at '/etc/conda/.mambarc' trace libmamba Configuration not found at '/etc/conda/condarc.d/' trace libmamba Configuration not found at '/etc/conda/condarc' trace libmamba Configuration not found at '/etc/conda/.condarc' trace libmamba Update configurable 'no_env' trace libmamba Compute configurable 'envs_dirs' trace libmamba Compute configurable 'file_specs' debug libmamba No env 'name' specified in YAML spec file '/home/runner/work/openmm-plumed/openmm-plumed/devtools/conda-envs/setup-miniconda-patched-build-ubuntu-latest.yml' trace libmamba Compute configurable 'spec_file_env_name' trace libmamba Compute configurable 'env_name' trace libmamba Compute configurable 'use_default_prefix_fallback' trace libmamba Compute configurable 'use_root_prefix_fallback' trace libmamba Compute configurable 'use_target_prefix_fallback' trace libmamba Compute configurable 'target_prefix' trace libmamba Get RC files configuration from locations up to TargetPrefix trace libmamba Configuration not found at '/usr/share/miniconda3/envs/build/.mambarc' trace libmamba Configuration not found at '/usr/share/miniconda3/envs/build/condarc.d' trace libmamba Configuration not found at '/usr/share/miniconda3/envs/build/condarc' trace libmamba Configuration not found at '/usr/share/miniconda3/envs/build/.condarc' trace libmamba Configuration not found at '/home/runner/.mambarc' trace libmamba Configuration not found at '/home/runner/.mamba/mambarc.d' trace libmamba Configuration not found at '/home/runner/.mamba/mambarc' trace libmamba Configuration not found at '/home/runner/.mamba/.mambarc' trace libmamba Configuration not found at '/home/runner/.config/mamba/mambarc.d' trace libmamba Configuration not found at '/home/runner/.config/mamba/mambarc' trace libmamba Configuration not found at '/home/runner/.config/mamba/.mambarc' trace libmamba Configuration found at '/home/runner/.condarc' trace libmamba Configuration not found at '/home/runner/.conda/condarc.d' trace libmamba Configuration not found at '/home/runner/.conda/condarc' trace libmamba Configuration not found at '/home/runner/.conda/.condarc' trace libmamba Configuration not found at '/home/runner/.config/conda/condarc.d' trace libmamba Configuration not found at '/home/runner/.config/conda/condarc' trace libmamba Configuration not found at '/home/runner/.config/conda/.condarc' trace libmamba Configuration not found at '/usr/share/miniconda3/.mambarc' trace libmamba Configuration not found at '/usr/share/miniconda3/condarc.d' trace libmamba Configuration not found at '/usr/share/miniconda3/condarc' trace libmamba Configuration found at '/usr/share/miniconda3/.condarc' trace libmamba Configuration not found at '/var/lib/conda/.mambarc' trace libmamba Configuration not found at '/var/lib/conda/condarc.d/' trace libmamba Configuration not found at '/var/lib/conda/condarc' trace libmamba Configuration not found at '/var/lib/conda/.condarc' trace libmamba Config

Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/.

/Users/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:200: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(

Mamba support is still experimental and can result in differently solved environments!

info libmamba ****************** Backtrace Start ****************** debug libmamba Loading configuration trace libmamba Compute configurable 'create_base' trace libmamba Compute configurable 'no_env' trace libmamba Compute configurable 'no_rc' trace libmamba Compute configurable 'rc_files' trace libmamba Compute configurable 'root_prefix' warning libmamba You have not set the root prefix environment variable. To permanently modify the root prefix location, either: - set the 'MAMBA_ROOT_PREFIX' environment variable - use the '-r,--root-prefix' CLI option - use 'mamba shell init ...' to initialize your shell (then restart or source the contents of the shell init script) Continuing with default value: "/Users/runner/miniconda3" trace libmamba Get RC files configuration from locations up to HomeDir

trace libmamba Configuration not found at '/Users/runner/.mambarc' trace libmamba Configuration not found at '/Users/runner/.mamba/mambarc.d' trace libmamba Configuration not found at '/Users/runner/.mamba/mambarc' trace libmamba Configuration not found at '/Users/runner/.mamba/.mambarc' trace libmamba Configuration not found at '/Users/runner/.config/mamba/mambarc.d' trace libmamba Configuration not found at '/Users/runner/.config/mamba/mambarc' trace libmamba Configuration not found at '/Users/runner/.config/mamba/.mambarc' trace libmamba Configuration found at '/Users/runner/.condarc' trace libmamba Configuration not found at '/Users/runner/.conda/condarc.d' trace libmamba Configuration not found at '/Users/runner/.conda/condarc' trace libmamba Configuration not found at '/Users/runner/.conda/.condarc' trace libmamba Configuration not found at '/Users/runner/.config/conda/condarc.d' trace libmamba Configuration not found at '/Users/runner/.config/conda/condarc' trace libmamba Configuration not found at '/Users/runner/.config/conda/.condarc' trace libmamba Configuration not found at '/Users/runner/miniconda3/.mambarc' trace libmamba Configuration not found at '/Users/runner/miniconda3/condarc.d' trace libmamba Configuration not found at '/Users/runner/miniconda3/condarc' trace libmamba Configuration found at '/Users/runner/miniconda3/.condarc' trace libmamba Configuration not found at '/var/lib/conda/.mambarc' trace libmamba Configuration not found at '/var/lib/conda/condarc.d/' trace libmamba Configuration not found at '/var/lib/conda/condarc' trace libmamba Configuration not found at '/var/lib/conda/.condarc' trace libmamba Configuration not found at '/etc/conda/.mambarc' trace libmamba Configuration not found at '/etc/conda/condarc.d/' trace libmamba Configuration not found at '/etc/conda/condarc' trace libmamba Configuration not found at '/etc/conda/.condarc' trace libmamba Update configurable 'no_env' trace libmamba Compute configurable 'envs_dirs'

trace libmamba Compute configurable 'file_specs' debug libmamba No env 'name' specified in YAML spec file '/Users/runner/work/openmm-plumed/openmm-plumed/devtools/conda-envs/setup-miniconda-patched-build-macos-latest.yml' trace libmamba Compute configurable 'spec_file_env_name'

trace libmamba Compute configurable 'env_name' trace libmamba Compute configurable 'use_default_prefix_fallback'

trace libmamba Compute configurable 'use_root_prefix_fallback' trace libmamba Compute configurable 'use_target_prefix_fallback'

trace libmamba Compute configurable 'target_prefix' trace libmamba Get RC files configuration from locations up to TargetPrefix