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master: Fix conflicts. #TASK-6219

master: Fix conflicts. #TASK-6219 #2460

Triggered via push December 19, 2024 17:34
@j-collj-coll
pushed d7e93bb
TASK-6219
Status Failure
Total duration 11m 10s
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49 errors
VariantQueryParserTest.testParseQuery: opencga-storage/opencga-storage-core/src/test/java/org/opencb/opencga/storage/core/variant/query/VariantQueryParserTest.java#L60
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
VariantQueryParserTest.preProcessGenotypesFilter: opencga-storage/opencga-storage-core/src/test/java/org/opencb/opencga/storage/core/variant/query/VariantQueryParserTest.java#L60
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
VariantQueryParserTest.testParseClinicalCombinations: opencga-storage/opencga-storage-core/src/test/java/org/opencb/opencga/storage/core/variant/query/VariantQueryParserTest.java#L60
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
HBaseToStudyEntryConverterTest.testGetAlternateCoordinate: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/converters/study/HBaseToStudyEntryConverterTest.java#L46
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
HBaseToStudyEntryConverterTest.testConvertExtendedFormat: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/converters/study/HBaseToStudyEntryConverterTest.java#L46
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
HBaseToStudyEntryConverterTest.testConvertFileEntryData: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/converters/study/HBaseToStudyEntryConverterTest.java#L46
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
HBaseToStudyEntryConverterTest.testConvertBasic: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/converters/study/HBaseToStudyEntryConverterTest.java#L46
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parsePopFreqQueryTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFamilyQuery_dp: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.validSampleIndexQueryTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFamilyQuery: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseVariantTpeQuery: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseAnnotationMaskTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileTest_multi: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileTest_samples_and_files_extra: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileTest_2sample_1file_and: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileTest_samples_or: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseSampleDataTest_samples_and: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileTest_1sample_2files: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileQualTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFamilyQuery_filter: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseSampleDataTest_samples_and_non_covered: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseSampleDataTest_samples_or: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileTest_samples_and_non_shared_file: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileFilterTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.testCoveredQuery_combined: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileTest_1sample_1file: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.testCoveredQuery_bt_tf: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.testCoveredQuery_ct_tf: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.testGetRangeQuery: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.testCoveredQuery_ct: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.testCoveredQuery_tf: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.testCoveredQuery_popFreq: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFamilyQuery_dp_partial: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.testBuildLocusQueries: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.testCoveredQuery_biotype: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileDPTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileTest_samples_and: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseIntergenicTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseSampleDataTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileTest_multi2: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileTest_2sample_1file_or_shared: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileTest_2sample_1file_or: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseSampleIndexQuery: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileTest_samples_and_files: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileTest_samples_and_shared_file: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
SampleIndexQueryParserTest.parseFileDataTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexQueryParserTest.java#L89
java.lang.NullPointerException at org.opencb.opencga.storage.core.metadata.VariantStorageMetadataManager.lambda$updateVariantIndexTimestamp$19(VariantStorageMetadataManager.java:572)
test / Execute JUnit and Jacoco tests
There were 48 failed tests

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build-folder Expired
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