Julia 1.11 update (separate manifest), 1.11 Documenter

[arlowhite]

Split manifest for Julia 1.10 & 1.11, Pkg update

Change Documenter GitHub workflow to 1.11, ] update

Only run docs action on PRs when Manifest.toml changed

Notes

Julia 1.11 has a new bug with Oxygen OxygenFramework/Oxygen.jl#226
This causes one request to fail after startup.

Docker

Wanted to bump Docker containers to 1.11, but leaving on 1.10 for now due to these issues.
Created issue #40

docker build . --target reefguide-src -t reefguide_1_10 --no-cache
Julia 1.10 build took 5m22s
Julia 1.11 build took 18m22s

Toward the end of the 1.11 build, these warnings are printed for every package. (not in 1.10)

Warning: Module StaticArrays with build ID ffffffff-ffff-ffff-0000-46a203311587 is missing from the cache.
This may mean StaticArrays [90137ffa-7385-5640-81b9-e52037218182] does not support precompilation but is imported by a module that does.

[arlowhite]

docker build is taking a long time. 926s
=> [reefguide-src reefguide-src 6/6] RUN julia --project=@reefguide -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.precompile(); using ReefGuideAPI;'
I'm seeing warnings like this for every package.

 => => # ┌ Warning: Module Setfield with build ID ffffffff-ffff-ffff-0000-4025972e8126 is missing from the cache.                                                                                                                                                                             
 => => # │ This may mean Setfield [efcf1570-3423-57d1-acb7-fd33fddbac46] does not support precompilation but is imported by a module that does. 

I don't recall those with 1.10, but maybe they were there. Would be interesting to compare 1.10 docker build time with 1.11

[arlowhite]

I get this error only with the docker container

2024-10-09 15:58:36 [ Info: Launching server... please wait
2024-10-09 15:58:36 [ Info: Parsing configuration from /data/reefguide/config.toml...
2024-10-09 15:58:36 [ Info: Setting up auth middleware and router.
2024-10-09 15:58:36 [ Info: Setting up region routes...
2024-10-09 15:58:39 ERROR: type Nothing has no field geometry
2024-10-09 15:58:39 Stacktrace:
2024-10-09 15:58:39  [1] getproperty
2024-10-09 15:58:39    @ ./Base.jl:49 [inlined]
2024-10-09 15:58:39  [2] setup_regional_data(config::Dict{String, Any})
2024-10-09 15:58:39    @ ReefGuideAPI /usr/local/src/reefguide/src/ReefGuideAPI.jl:109
2024-10-09 15:58:39  [3] setup_region_routes(config::Dict{String, Any}, auth::Oxygen.Core.RouterHOF.var"#2#6"{Nothing, Nothing, Oxygen.Core.RouterHOF.var"#2#3#7"{Oxygen.Core.AppContext.Context, String, Vector{String}, Vector{typeof(identity)}, Oxygen.Core.RouterHOF.var"#fixpath#5"}})
2024-10-09 15:58:39    @ ReefGuideAPI /usr/local/src/reefguide/src/criteria_assessment/criteria.jl:106
2024-10-09 15:58:39  [4] start_server(config_path::String)
2024-10-09 15:58:39    @ ReefGuideAPI /usr/local/src/reefguide/src/ReefGuideAPI.jl:212
2024-10-09 15:58:39  [5] top-level scope
2024-10-09 15:58:39    @ none:1

[ConnectedSystems]

Suspect it's something to do with the cache. Does the build process include the cache warmup?

[arlowhite]

Docker container is working. I had data directory volume misconfigured. Though would be good to have a better error message in that situation.