Releases: olgatsiouri1996/CpG_island_identificator
Releases · olgatsiouri1996/CpG_island_identificator
v13.00
CpG island identificator: CpG island identification pipeline inspired by the Gardiner-Garden and Frommer (1987) method
pyfaidx used instead of biopython so that the algorith doesn't have to store sequences to memory
CpG island identificator: CpG island identification pipeline inspired by the Gardiner-Garden and Frommer (1987) method
Command line binaries for linux and windows added (link in README)
CpG island identificator: CpG island identification pipeline inspired by the Gardiner-Garden and Frommer (1987) method
The program now gives 2 options:
- import a single-fasta file and output a txt file
- import many single-fasta files from a directory and output to a txt for each single-fasta with the gc content, gc ratio, step and window size as suffix
CpG island identificator
addition of scripts and executable for multiple single-fasta file hadling
CpG island identificator
addition of column with the fasta ids
CpG island identificator
Changes:
- Search for reverse complement sequence added
- fix intentation from spaces to tabs
CpG island identificator
Changes:
Search for reverse complement sequence added
CpG island identificator
v4.0.0 Delete calculate_obs_exp_cpg.py
CpG island identification pipeline
v3.0.0 Create LICENSE