v13.00

pyfaidx instead of biopython so that the algorith doesn't have to store sequences to memory

CpG island identificator: CpG island identification pipeline inspired by the Gardiner-Garden and Frommer (1987) method

pyfaidx used instead of biopython so that the algorith doesn't have to store sequences to memory

CpG island identificator: CpG island identification pipeline inspired by the Gardiner-Garden and Frommer (1987) method

Command line binaries for linux and windows added (link in README)

CpG island identificator: CpG island identification pipeline inspired by the Gardiner-Garden and Frommer (1987) method

The program now gives 2 options:

1. import a single-fasta file and output a txt file
2. import many single-fasta files from a directory and output to a txt for each single-fasta with the gc content, gc ratio, step and window size as suffix

CpG island identificator

addition of scripts and executable for multiple single-fasta file hadling

CpG island identificator

addition of column with the fasta ids

CpG island identificator

Changes:

1. Search for reverse complement sequence added
2. fix intentation from spaces to tabs

CpG island identificator

Changes:

Search for reverse complement sequence added

CpG island identificator

v4.0.0

Delete calculate_obs_exp_cpg.py

CpG island identification pipeline

v3.0.0

Create LICENSE