Update xcftools · odelaneau/shapeit5@c44cd04

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Update xcftools

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srubinacci committed Mar 15, 2024

1 parent 896fff6 commit c44cd04

xcftools

Submodule xcftools updated 31 files

+4 −0		.gitignore
+5 −0		common/src/utils/otools.h
+37 −0		common/src/utils/string_utils.h
+288 −41		common/src/utils/xcf.h
+86 −73		makefile
+325 −183		src/concat/concat_algorithm.cpp
+4 −3		src/concat/concat_finalise.cpp
+13 −6		src/concat/concat_header.h
+11 −8		src/concat/concat_initialise.cpp
+2 −2		src/concat/concat_management.cpp
+29 −12		src/concat/concat_parameters.cpp
+5 −1		src/containers/bitvector.cpp
+19 −4		src/containers/bitvector.h
+587 −0		src/fill_tags/fill_tags_algorithm.cpp
+221 −0		src/fill_tags/fill_tags_argument_set.h
+30 −0		src/fill_tags/fill_tags_finalise.cpp
+244 −0		src/fill_tags/fill_tags_header.h
+96 −0		src/fill_tags/fill_tags_initialise.cpp
+38 −0		src/fill_tags/fill_tags_management.cpp
+10 −5		src/main.cpp
+32 −22		src/modes/bcf2binary.cpp
+5 −2		src/modes/bcf2binary.h
+3 −7		src/modes/binary2bcf.cpp
+1 −1		src/modes/binary2bcf.h
+534 −0		src/modes/binary2binary.cpp
+39 −0		src/modes/binary2binary.h
+22 −26		src/viewer/viewer_algorithm.cpp
+68 −0		src/viewer/viewer_header.h
+1 −1		src/viewer/viewer_management.cpp
+73 −20		src/viewer/viewer_parameters.cpp
+1 −1		versions/versions.h

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