Code

Fix scallop example vignette#65

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Paul-Carvalho merged 45 commits intomasternoaa-nwfsc/FishSET:masterfrom fix-scallop-example-vignettenoaa-nwfsc/FishSET:fix-scallop-example-vignetteCopy head branch name to clipboardApr 24, 2024

+241-271

Commits

Commits on Apr 22, 2024

• test next zone_summary function call in vignette

  Paul-Carvalho

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  173eff5

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• comment out most of zone_summary for testing

  Paul-Carvalho

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  dfa7b34

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• restore rbuildignore

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• add data loading in zone_summary

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Commits on Apr 23, 2024

• comment out all lines except dat and spat setup

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  8f73ad3

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• keep only dat

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  4f75842

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• comment out all code again

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• add data_pull to zone_summary

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• get dataset in zone_summary

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• add parse_data_name to zone_summary

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• remove @md in documentation of zone_summary

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• move documentation in zone_summary

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  6d122b9

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• change $ to [[]] in parse_data_name

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  10df923

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• restore parse_data_name and comment out second part of problem chunk in scallop-example vignette

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• remove rlang::caller_env from parse_data_name

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• add rlang::caller_env back to parse_data_name

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• comment out parse_data_name in zone_summary

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• add outlier_table to zone_summary just to check if it will build without error

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• keep parse_data_name commented out, but try adding spatout data in zone_summary

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• check parse_data_name for spat in zone_summary

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• comment out parse_data_name code

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  f24dfb7

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• testing parse_data_name again

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• remove out but keep parse_data_name

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  4eb9378

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• restore parse_data_name and test if error occurs on following chunk in vignette

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• restore zone_summary

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  1b7d81b

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• add summary table

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  4d1b306

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• add percent check back in zone_summary

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  1023c23

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• add conf check and merge spat to zone_summary function

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• had to comment out code at the end of zone_summary

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  863d262

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• add base_map code back in zone_summary

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• add breaks and z_plot function to zone_summary

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  4b6dbab

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• needed to add full if statement

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• comment out multiplot code

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• add group_zone function in zone_summary

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• add code after group zone function in zone_summary

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• add code in else statement of multiplot in zone_summary

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• add rest of multiplot ifelse statement in zone_summary

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• keep plotly code and comment our save plot

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  f1bb110

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• try using an intermediate var for z_plot in esle statement

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• try adding only ggplotly to else statement

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• comment out plotly stuff for testing

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  e5122c9

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• uncomment binned assignement in z_plot_fun in zone_summary

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• comment out scale for ggplot in z_plot_fun in zone_summary

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• test rest of zone_summary function

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Commits on Apr 24, 2024

• change color scale for zone_summary to always plot continuous viridis color gradient

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