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Release 0.13.0
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@satra satra released this 12 May 10:39
· 4584 commits to master since this release
0.13.0
fd5b81b

Release 0.13.0 (May 11, 2017)

  • ENH: Multi-stage recon-all directives (#1991)
  • FIX: FEAT "folder does not exist" error (#2000)
  • ENH: Niftyfit interfaces (#1910)
  • FIX: Define ANTSPATH for BrainExtraction automatically (#1986)
  • ENH: New trait for imaging files (#1949)
  • ENH: Niftyseg interfaces (#1911)
  • ENH: Niftyreg interfaces (#1913)
  • MRG: Allow more support for CLI (#1908)
  • ENH: 3dQwarpPlusMinus interface (#1974)
  • FIX: PY3.6 support (#1977)
  • FIX: PY3 and stream fixes for MRTrix2TrackVis (#1804)
  • ENH: More mask options for CompCor interfaces (#1968 + #1992)
  • ENH: Additional TOPUP outputs (#1976)
  • ENH: Additional Eddy flags (#1967)
  • ENH: ReconAll handlers for less common cases (#1966)
  • ENH: FreeSurferSource now finds graymid/midthickness surfs (#1972)
  • ENH: Additional fslmaths dimensional reduction operations (#1956)
  • ENH: More options for RobustFOV interface (#1923)
  • ENH: Add MRIsCombine to FreeSurfer utils (#1948)
  • FIX: Level1Design EV parameter substitution (#1953)
  • FIX: Dcm2niix outputs can be uncompressed (#1951)
  • FIX: Ensure build fails in Circle when tests fail (#1981)
  • ENH: Add interface to antsAffineInitializer (#1980)
  • ENH: AFNI motion parameter support for FrameWiseDisplacement (#1840)
  • ENH: Add ANTs KellyKapowski interface (#1845)
  • FIX: AFNI interface bug setting OMP_NUM_THREADS to 1 (#1728)
  • FIX: Select Eddy run command at runtime (#1871)
  • FIX: Increase FLIRT's flexibility with apply_xfm (#1875)
  • DOC: Update FSL preprocess docstrings (#1881)
  • ENH: Support GIFTI outputs in SampleToSurface (#1886)
  • FIX: Configparser differences between PY2 and PY3 (#1890)
  • ENH: Add mris_expand interface (#1893)
  • FIX: Split over-eager globs in FreeSurferSource (#1894)
  • FIX: Store undefined by default so that xor checks don't trip (#1903)
  • FIX: Gantt chart generator PY3 compatibility (#1907)
  • FIX: Add DOF and --fsl-dof options to BBRegister (#1917)
  • ENH: Auto-derive input_names in Function (#1918)
  • FIX: Minor fixes for NonSteadyStateDetector (#1926)
  • DOC: Add duecredit references for AFNI and FSL (#1930)
  • ENH: Added zenodo (https://zenodo.org/) file (#1924)
  • ENH: Disable symlinks on CIFS filesystems (#1941)
  • ENH: Sphinx extension to plot workflows (#1896)
  • ENH: Added non-steady state detector for EPI data (#1839)
  • ENH: Enable new BBRegister init options for FSv6+ (#1811)
  • REF: Splits nipype.interfaces.utility into base, csv, and wrappers (#1828)
  • FIX: Makespec now runs with nipype in current directory (#1813)
  • FIX: Flexible nifti opening with mmap if Numpy < 1.12.0 (#1796 + #1831)
  • ENH: DVARS includes intensity normalization feature - turned on by default (#1827)
  • FIX: DVARS is correctly using sum of squares instead of standard deviation (#1827)
  • ENH: Refactoring of nipype.interfaces.utility (#1828)
  • FIX: CircleCI were failing silently. Some fixes to tests (#1833)
  • FIX: Issues in Docker image permissions, and docker documentation (#1825)
  • ENH: Revised all Dockerfiles and automated deployment to Docker Hub
    from CircleCI (#1815)
  • ENH: Update ReconAll interface for FreeSurfer v6.0.0 (#1790)
  • FIX: Cast DVARS float outputs to avoid memmap error (#1777)
  • FIX: FSL FNIRT intensity mapping files (#1799)
  • ENH: Additional outputs generated by FSL EDDY (#1793)
  • TST: Parallelize CircleCI build across 4 containers (#1769)
  • FIX: Compatibility with traits 4.6 (#1770)
  • FIX: Multiproc deadlock (#1756)
  • TST: Replace nose and unittest with pytest (#1722, #1751)
  • FIX: Semaphore capture using MultiProc plugin (#1689)
  • REF: Refactor AFNI interfaces (#1678, #1680)
  • ENH: Move nipype commands to group command using click (#1608)
  • FIX: AFNI Retroicor interface fixes (#1669)
  • FIX: Minor errors after migration to setuptools (#1671)
  • ENH: Add AFNI 3dNote interface (#1637)
  • ENH: Abandon distutils, only use setuptools (#1627)
  • FIX: Minor bugfixes related to unicode literals (#1656)
  • TST: Automatic retries in travis (https://github.com/nipy/nipype/pull/1659/files)
  • ENH: Add signal extraction interface (#1647)
  • ENH: Add a DVARS calculation interface (#1606)
  • ENH: New interface to b0calc of FSL-POSSUM (#1399)
  • ENH: Add CompCor (#1599)
  • ENH: Add duecredit entries (#1466)
  • FIX: Python 3 compatibility fixes (#1572)
  • REF: Improved PEP8 compliance for fsl interfaces (#1597)
  • REF: Improved PEP8 compliance for spm interfaces (#1593)
  • TST: Replaced coveralls with codecov (#1609)
  • ENH: More BrainSuite interfaces (#1554)
  • ENH: Convenient load/save of interface inputs (#1591)
  • ENH: Add a Framewise Displacement calculation interface (#1604)
  • FIX: Use builtins open and unicode literals for py3 compatibility (#1572)
  • TST: reduce the size of docker images & use tags for images (#1564)
  • ENH: Implement missing inputs/outputs in FSL AvScale (#1563)
  • FIX: Fix symlink test in copyfile (#1570, #1586)
  • ENH: Added support for custom job submission check in SLURM (#1582)
  • ENH: Added ANTs interface CreateJacobianDeterminantImage; replaces deprecated JacobianDeterminant
    (#1654)
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