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update vignette due to link timeout in winbuilder.
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MattPM committed Jun 15, 2024
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This tutorial is a guide. It cam be modified to fit your needs. Additional vignettes are available on CRAN.

### Some recent publications using dsb <a name="pubications"></a>
Publications from outside institutes
[Jardine et al. *Nature* (2021)](https://www.nature.com/articles/s41586-021-03929-x)
[Mimitou et. al *Nature Biotechnology* (2021)](https://www.nature.com/articles/s41587-021-00927-2)
[COMBAT consortium et al. *Cell* (2022)](https://www.cell.com/cell/pdf/S0092-8674(22)00070-8.pdf)

Publications from the Tsang lab
[Kotliarov et al. *Nature Medicine* (2020)](https://www.nature.com/articles/s41591-020-0769-8)
[Liu et al. *Cell* (2021)](https://www.cell.com/cell/pdf/S0092-8674(21)00168-9.pdf)
Publications from other investigators <br>
[Izzo et al. *Nature* 2024](https://doi.org/10.1038/s41586-024-07388-y) <br>
[Arieta et al. *Cell* 2023](https://doi.org/10.1016/j.cell.2023.04.007) <br>
[Magen et al. *Nature Medicine* 2023](https://doi.org/10.1038/s41591-023-02345-0) <br>
[COMBAT consortium *Cell* 2021](https://doi.org/10.1016/j.cell.2022.01.012) <br>
[Jardine et al. *Nature* 2021](https://doi.org/10.1038/s41586-021-03929-x) <br>
[Mimitou et al. *Nature Biotechnology* 2021](https://doi.org/10.1038/s41587-021-00927-2) <br>

Publications from the Tsang lab <br>
[Mulè et al. *Immunity* 2024](https://mattpm.net/man/pdf/natural_adjuvant_immunity_2024.pdf) <br>
[Sparks et al. *Nature* 2023](https://doi.org/10.1038/s41586-022-05670-5) <br>
[Liu et al. *Cell* 2021](https://doi.org/10.1016/j.cell.2021.02.018) <br>
[Kotliarov et al. *Nature Medicine* 2020](https://doi.org/10.1038/s41591-020-0769-8) <br>


### using other alignment algorithms <a name="otheraligners"></a>
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