[automated] Update json files and markdown cache

nf-core · Jan 13, 2025 · e62293d · e62293d
1 parent 583bb1c
commit e62293d
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Showing 3 changed files with 56 additions and 16 deletions.
diff --git a/.cache.tar.xz b/.cache.tar.xz
diff --git a/public/components.json b/public/components.json
@@ -8593,6 +8593,10 @@
           "name": "rnafusion",
           "version": "3.0.2"
         },
+        {
+          "name": "rnafusion",
+          "version": "3.0.2"
+        },
         {
           "name": "rnafusion",
           "version": "3.0.2"
@@ -27848,6 +27852,10 @@
           "name": "genomeassembler",
           "version": "dev"
         },
+        {
+          "name": "genomeassembler",
+          "version": "dev"
+        },
         {
           "name": "genomeassembler",
           "version": "dev"
@@ -108419,6 +108427,22 @@
           "name": "pathogensurveillance",
           "version": "dev"
         },
+        {
+          "name": "phyloplace",
+          "version": "1.0.0"
+        },
+        {
+          "name": "ampliseq",
+          "version": "2.12.0"
+        },
+        {
+          "name": "multiplesequencealign",
+          "version": "1.0.0"
+        },
+        {
+          "name": "pathogensurveillance",
+          "version": "dev"
+        },
         {
           "name": "phyloplace",
           "version": "1.0.0"
@@ -114767,6 +114791,10 @@
           "name": "genomeassembler",
           "version": "dev"
         },
+        {
+          "name": "genomeassembler",
+          "version": "dev"
+        },
         {
           "name": "genomeassembler",
           "version": "dev"
@@ -133831,6 +133859,10 @@
           "name": "viralrecon",
           "version": "2.6.0"
         },
+        {
+          "name": "viralrecon",
+          "version": "2.6.0"
+        },
         {
           "name": "viralrecon",
           "version": "2.6.0"
@@ -208720,6 +208752,10 @@
           "name": "phageannotator",
           "version": "dev"
         },
+        {
+          "name": "phageannotator",
+          "version": "dev"
+        },
         {
           "name": "phageannotator",
           "version": "dev"
@@ -212442,6 +212478,10 @@
           "name": "riboseq",
           "version": "1.0.1"
         },
+        {
+          "name": "riboseq",
+          "version": "1.0.1"
+        },
         {
           "name": "riboseq",
           "version": "1.0.1"

diff --git a/public/pipelines.json b/public/pipelines.json
@@ -23,7 +23,7 @@
             "has_wiki": false,
             "has_pages": false,
             "has_discussions": false,
-            "forks_count": 37,
+            "forks_count": 38,
             "archived": false,
             "disabled": false,
             "open_issues_count": 24,
@@ -38,7 +38,7 @@
                 "repseq"
             ],
             "visibility": "public",
-            "forks": 37,
+            "forks": 38,
             "open_issues": 24,
             "watchers": 55,
             "default_branch": "master",
@@ -72,7 +72,7 @@
                     "status": "disabled"
                 }
             },
-            "network_count": 37,
+            "network_count": 38,
             "subscribers_count": 150,
             "team_contributors_permission_push": true,
             "team_contributors_permission_admin": false,
@@ -12878,10 +12878,10 @@
             "fork": false,
             "url": "https://api.github.com/repos/nf-core/fastqrepair",
             "created_at": "2024-09-06T16:54:32Z",
-            "updated_at": "2025-01-12T11:44:10Z",
-            "pushed_at": "2025-01-12T11:44:07Z",
+            "updated_at": "2025-01-12T14:16:32Z",
+            "pushed_at": "2025-01-12T14:16:29Z",
             "homepage": "https://nf-co.re/fastqrepair",
-            "size": 762,
+            "size": 761,
             "stargazers_count": 1,
             "watchers_count": 1,
             "language": "Nextflow",
@@ -13007,9 +13007,9 @@
                 }
             ],
             "released_after_tools": false,
-            "head_sha": "8d6cf9740ec1135ba2cfd8961ecfec70abd5ad9c",
+            "head_sha": "0805d61f07894b45e6beb9081f30b5598d43bba8",
             "last_release_is_head": false,
-            "last_release_vs_default_compare_url": "https://github.com/nf-core/fastqrepair/compare/8d6cf9740ec1135ba2cfd8961ecfec70abd5ad9c...undefined",
+            "last_release_vs_default_compare_url": "https://github.com/nf-core/fastqrepair/compare/0805d61f07894b45e6beb9081f30b5598d43bba8...undefined",
             "commits_to_dev": 30,
             "is_DSL2": true,
             "has_nf_test": true,
@@ -13032,8 +13032,8 @@
             "releases": [
                 {
                     "tag_name": "dev",
-                    "published_at": "2025-01-12T11:43:37Z",
-                    "tag_sha": "8d6cf9740ec1135ba2cfd8961ecfec70abd5ad9c",
+                    "published_at": "2025-01-12T14:16:29Z",
+                    "tag_sha": "0805d61f07894b45e6beb9081f30b5598d43bba8",
                     "has_schema": true,
                     "doc_files": [
                         "docs/output.md",
@@ -17324,7 +17324,7 @@
             "url": "https://api.github.com/repos/nf-core/isoseq",
             "created_at": "2022-06-03T10:07:33Z",
             "updated_at": "2025-01-06T22:10:16Z",
-            "pushed_at": "2025-01-09T01:10:38Z",
+            "pushed_at": "2025-01-13T00:27:55Z",
             "homepage": "https://nf-co.re/isoseq",
             "size": 5388,
             "stargazers_count": 31,
@@ -37595,12 +37595,12 @@
             "fork": false,
             "url": "https://api.github.com/repos/nf-core/sarek",
             "created_at": "2019-04-30T15:43:00Z",
-            "updated_at": "2025-01-08T02:11:03Z",
+            "updated_at": "2025-01-12T23:27:30Z",
             "pushed_at": "2025-01-08T09:36:48Z",
             "homepage": "https://nf-co.re/sarek",
             "size": 98974,
-            "stargazers_count": 413,
-            "watchers_count": 413,
+            "stargazers_count": 415,
+            "watchers_count": 415,
             "language": "Nextflow",
             "has_issues": true,
             "has_projects": false,
@@ -37631,7 +37631,7 @@
             "visibility": "public",
             "forks": 420,
             "open_issues": 300,
-            "watchers": 413,
+            "watchers": 415,
             "default_branch": "master",
             "temp_clone_token": "",
             "allow_squash_merge": true,
@@ -40301,7 +40301,7 @@
             "url": "https://api.github.com/repos/nf-core/scdownstream",
             "created_at": "2024-06-11T06:38:31Z",
             "updated_at": "2025-01-10T14:05:10Z",
-            "pushed_at": "2025-01-11T14:20:55Z",
+            "pushed_at": "2025-01-12T18:05:49Z",
             "homepage": "https://nf-co.re/scdownstream",
             "size": 1977,
             "stargazers_count": 45,