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Important! Template update for nf-core/tools v3.0.2 #1050

Important! Template update for nf-core/tools v3.0.2

Important! Template update for nf-core/tools v3.0.2 #1050

GitHub Actions / JUnit Test Report failed Oct 17, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

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Check failure on line 1 in nf

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

nf.test-dataset_alevin_aligner

Assertion failed: 

11 of 11 assertions failed
Raw output
Nextflow stdout:

ERROR ~ Error executing process > 'NFCORE_SCRNASEQ:SCRNASEQ:FASTQC_CHECK:FASTQC (Sample_X)'

Caused by:
  Process requirement exceeds available CPUs -- req: 6; avail: 4


Command executed:

  printf "%s %s\n" Sample_X_S1_L001_R1_001.fastq.gz Sample_X_1.gz Sample_X_S1_L001_R2_001.fastq.gz Sample_X_2.gz | while read old_name new_name; do
      [ -f "${new_name}" ] || ln -s $old_name $new_name
  done
  
  fastqc \
      --quiet \
      --threads 6 \
      --memory 6144 \
      Sample_X_1.gz Sample_X_2.gz
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_SCRNASEQ:SCRNASEQ:FASTQC_CHECK:FASTQC":
      fastqc: $( fastqc --version | sed '/FastQC v/!d; s/.*v//' )
  END_VERSIONS

Command exit status:
  -

Command output:
  (empty)

Work dir:
  /home/runner/work/scrnaseq/scrnaseq/.nf-test/tests/6264e47732939bd9691cd8ea56b9ed1f/work/f2/6845f4d679c7597f0934c5e4e43664

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`

 -- Check '/home/runner/work/scrnaseq/scrnaseq/.nf-test/tests/6264e47732939bd9691cd8ea56b9ed1f/meta/nextflow.log' file for details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting

 -- Check '/home/runner/work/scrnaseq/scrnaseq/.nf-test/tests/6264e47732939bd9691cd8ea56b9ed1f/meta/nextflow.log' file for details
Nextflow stderr:

Nextflow 24.04.4 is available - Please consider updating your version to it