Important! Template update for nf-core/tools v3.0.2 #1050
GitHub Actions / JUnit Test Report
failed
Oct 17, 2024 in 0s
1 tests run, 0 passed, 0 skipped, 1 failed.
Annotations
github-actions / JUnit Test Report
nf.test-dataset_alevin_aligner
Assertion failed:
11 of 11 assertions failed
Raw output
Nextflow stdout:
ERROR ~ Error executing process > 'NFCORE_SCRNASEQ:SCRNASEQ:FASTQC_CHECK:FASTQC (Sample_X)'
Caused by:
Process requirement exceeds available CPUs -- req: 6; avail: 4
Command executed:
printf "%s %s\n" Sample_X_S1_L001_R1_001.fastq.gz Sample_X_1.gz Sample_X_S1_L001_R2_001.fastq.gz Sample_X_2.gz | while read old_name new_name; do
[ -f "${new_name}" ] || ln -s $old_name $new_name
done
fastqc \
--quiet \
--threads 6 \
--memory 6144 \
Sample_X_1.gz Sample_X_2.gz
cat <<-END_VERSIONS > versions.yml
"NFCORE_SCRNASEQ:SCRNASEQ:FASTQC_CHECK:FASTQC":
fastqc: $( fastqc --version | sed '/FastQC v/!d; s/.*v//' )
END_VERSIONS
Command exit status:
-
Command output:
(empty)
Work dir:
/home/runner/work/scrnaseq/scrnaseq/.nf-test/tests/6264e47732939bd9691cd8ea56b9ed1f/work/f2/6845f4d679c7597f0934c5e4e43664
Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`
-- Check '/home/runner/work/scrnaseq/scrnaseq/.nf-test/tests/6264e47732939bd9691cd8ea56b9ed1f/meta/nextflow.log' file for details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting
-- Check '/home/runner/work/scrnaseq/scrnaseq/.nf-test/tests/6264e47732939bd9691cd8ea56b9ed1f/meta/nextflow.log' file for details
Nextflow stderr:
Nextflow 24.04.4 is available - Please consider updating your version to it
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