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fix(fusionreport) set html as optional #380

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merged 6 commits into from
Aug 25, 2023
Merged

fix(fusionreport) set html as optional #380

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90c120b
optional html for fusionreport
fevac Aug 21, 2023
5b7dfc8
Merge branch 'dev' into fix_fusionreport_optional_html
rannick Aug 21, 2023
88d1051
update changelog
fevac Aug 21, 2023
98fb0ba
make fusioninspector tsv optional
fevac Aug 22, 2023
1db0246
Revert "make fusioninspector tsv optional"
fevac Aug 25, 2023
5c84661
Merge branch 'dev' into fix_fusionreport_optional_html
fevac Aug 25, 2023
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -14,6 +14,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
### Fixed

- Tail trimming for reverse reads [#379](https://github.com/nf-core/rnafusion/pull/379)
- Set html files as optional in fusionreport [#380](https://github.com/nf-core/rnafusion/pull/380)

### Removed

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2 changes: 1 addition & 1 deletion modules/local/fusionreport/detect/main.nf
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Expand Up @@ -16,7 +16,7 @@ process FUSIONREPORT {
tuple val(meta), path("*fusionreport.tsv") , emit: fusion_list
tuple val(meta), path("*fusionreport_filtered.tsv") , emit: fusion_list_filtered
tuple val(meta), path("index.html") , emit: report
tuple val(meta), path("*_*.html") , emit: html
tuple val(meta), path("*_*.html") , optional:true, emit: html
tuple val(meta), path("*.csv") , optional:true, emit: csv
tuple val(meta), path("*.json") , optional:true, emit: json

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