add extra options for fusioninspector

nf-core · Oct 20, 2023 · fa12804 · fa12804
1 parent 6a18471
commit fa12804
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/conf/modules.config b/conf/modules.config
@@ -102,7 +102,7 @@ process {
     withName: FUSIONINSPECTOR {
         ext.when = { !params.skip_vis }
         ext.args = { params.fusioninspector_limitSjdbInsertNsj != 1000000 ? "--STAR_xtra_params \"--limitSjdbInsertNsj ${params.fusioninspector_limitSjdbInsertNsj}\"" : '' }
-        ext.args2 = '--extreme_sensitivity'
+        ext.args2 = '--extreme_sensitivity --annotate --examine_coding_effect --predict_cosmic_like'
     }
 
     withName: FUSIONREPORT {