Qualify SAGE Docker image URL with 'quay.io/'

nf-core · May 10, 2024 · 50d77a2 · 50d77a2
1 parent b7f6370
commit 50d77a2
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/modules/local/sage/append/main.nf b/modules/local/sage/append/main.nf
@@ -5,7 +5,7 @@ process SAGE_APPEND {
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/hmftools-sage:3.4.3--hdfd78af_0' :
-        'biocontainers/hmftools-sage:3.4.3--hdfd78af_0' }"
+        'quay.io/biocontainers/hmftools-sage:3.4.3--hdfd78af_0' }"
 
     input:
     tuple val(meta), path(vcf), path(bam), path(bai)

diff --git a/modules/local/sage/germline/main.nf b/modules/local/sage/germline/main.nf
@@ -5,7 +5,7 @@ process SAGE_GERMLINE {
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/hmftools-sage:3.4.3--hdfd78af_0' :
-        'biocontainers/hmftools-sage:3.4.3--hdfd78af_0' }"
+        'quay.io/biocontainers/hmftools-sage:3.4.3--hdfd78af_0' }"
 
     input:
     tuple val(meta), path(tumor_bam), path(normal_bam), path(tumor_bai), path(normal_bai)

diff --git a/modules/local/sage/somatic/main.nf b/modules/local/sage/somatic/main.nf
@@ -7,7 +7,7 @@ process SAGE_SOMATIC {
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/hmftools-sage:3.4.3--hdfd78af_0' :
-        'biocontainers/hmftools-sage:3.4.3--hdfd78af_0' }"
+        'quay.io/biocontainers/hmftools-sage:3.4.3--hdfd78af_0' }"
 
     input:
     tuple val(meta), path(tumor_bam), path(normal_bam), path(tumor_bai), path(normal_bai)