Fix linting

nf-core · Dec 17, 2024 · eb84fde · eb84fde
1 parent 50e2138
commit eb84fde
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Showing 2 changed files with 17 additions and 8 deletions.
diff --git a/modules/nf-core/custom/matrixfilter/main.nf b/modules/nf-core/custom/matrixfilter/main.nf
@@ -11,7 +11,7 @@ process CUSTOM_MATRIXFILTER {
     output:
     tuple val(meta), path("*.filtered.tsv")             , emit: filtered
     tuple val(meta), path("*.tests.tsv")                , emit: tests
-    tuple val(meta), path("*R_sessionInfo.log")          , emit: session_info
+    tuple val(meta), path("*R_sessionInfo.log")         , emit: session_info
     path "versions.yml"                                 , emit: versions
 
     when:

diff --git a/modules/nf-core/custom/matrixfilter/meta.yml b/modules/nf-core/custom/matrixfilter/meta.yml
@@ -42,29 +42,38 @@ output:
           description: |
             Groovy Map containing information on experiment.
             e.g. [ id:'test' ]
+          pattern: "*.filtered.tsv"
       - "*.filtered.tsv":
-          type: file
-          description: Filtered version of input matrix
+          type: map
+          description: |
+            Groovy Map containing information on experiment.
+            e.g. [ id:'test' ]
           pattern: "*.filtered.tsv"
   - tests:
       - meta:
           type: map
           description: |
             Groovy Map containing information on experiment.
             e.g. [ id:'test' ]
+          pattern: "*.tests.tsv"
       - "*.tests.tsv":
-          type: file
-          description: Boolean matrix with pass/ fail status for each test on each feature
+          type: map
+          description: |
+            Groovy Map containing information on experiment.
+            e.g. [ id:'test' ]
           pattern: "*.tests.tsv"
   - session_info:
       - meta:
           type: map
           description: |
             Groovy Map containing information on experiment.
             e.g. [ id:'test' ]
-      - R_sessionInfo.log:
-          type: file
-          description: Log file containing R session information
+          pattern: "*.log"
+      - "*R_sessionInfo.log":
+          type: map
+          description: |
+            Groovy Map containing information on experiment.
+            e.g. [ id:'test' ]
           pattern: "*.log"
   - versions:
       - versions.yml: