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16 Open 71 Closed
16 Open 71 Closed
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Issues list

Double check and fix the multiqc report
#219 opened Nov 7, 2024 by nvnieuwk
Convert to new workflow output definitions
#218 opened Nov 7, 2024 by nvnieuwk
1
@nvnieuwk
Update documentation to incorporate the latest changes
#217 opened Nov 7, 2024 by nvnieuwk
Rewrite the nf-tests for the full pipeline run
#216 opened Nov 7, 2024 by nvnieuwk
Add nf-tests for all missing subwfs
#215 opened Nov 7, 2024 by nvnieuwk
Add nf-tests for all missing modules
#214 opened Nov 7, 2024 by nvnieuwk
GATK is slow AF, investigate alternatives to speed things up enhancement New feature or request
#211 opened Oct 17, 2024 by matthdsm
Restructure output directory enhancement New feature or request
#209 opened Oct 14, 2024 by nvnieuwk
@nvnieuwk
Automap results are not working correctly with vardict bug Something isn't working
#207 opened Oct 10, 2024 by nvnieuwk 1.9.0
Explore VariantRecalibrator and ApplyVQSR for better filtering enhancement New feature or request
#166 opened Mar 13, 2024 by nvnieuwk
2
Add somatic calling enhancement New feature or request
#141 opened Jul 12, 2023 by nvnieuwk
Increase default memory in some processes bug Something isn't working
#139 opened Jul 12, 2023 by nvnieuwk
2 tasks
Investigate non-coding variants annotation enhancement New feature or request
#127 opened Jun 8, 2023 by nvnieuwk
Investigate UTRannotator VEP plugin enhancement New feature or request
#126 opened Jun 5, 2023 by nvnieuwk
Investigate perbase merge_adjacent enhancement New feature or request
#122 opened May 25, 2023 by nvnieuwk
Fix dump statements not working correctly with set bug Something isn't working
#45 opened Jan 5, 2023 by nvnieuwk
@nvnieuwk
ProTip! Exclude everything labeled bug with -label:bug.