Deploy private.nextflu.org #75
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name: Deploy private.nextflu.org | |
on: | |
workflow_dispatch: | |
inputs: | |
aws_batch_job_id: | |
description: The AWS Batch Job ID for the private nextflu seasonal flu builds. | |
type: string | |
required: true | |
deploy_to_staging: | |
description: Deploy to the staging website at https://staging-private-nextflu.netlify.app | |
type: boolean | |
required: true | |
env: | |
# Everything should run from within the nextflu/auspice directory | |
# https://github.com/blab/nextflu/tree/e672eba6d2e0ad5e10b0775f94fc87ffc75d6005/auspice | |
WORKING_DIR: auspice | |
AUSPICE_DIR: auspice-who | |
defaults: | |
run: | |
# Cannot use contexts or expressions for this top level defaults, so must | |
# hard-code the path instead of using env.WORKING_DIR | |
# https://docs.github.com/en/actions/using-jobs/setting-default-values-for-jobs#setting-default-shell-and-working-directory | |
working-directory: auspice | |
jobs: | |
deploy_to_netlify: | |
runs-on: ubuntu-latest | |
permissions: | |
id-token: write | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
repository: blab/nextflu | |
sparse-checkout: | | |
${{ env.WORKING_DIR }} | |
- uses: ruby/setup-ruby@v1 | |
with: | |
ruby-version: '2.3.7' | |
bundler-cache: true | |
# `uses` does not respect the default working-directory | |
# Luckily, the setup-ruby action has a `working-directory` input | |
# https://github.com/ruby/setup-ruby#working-directory | |
# | |
# Must be set to access the Gemfile.lock file in the auspice directory | |
# https://github.com/blab/nextflu/blob/12c5645d990f53c553d6f04e293e2f12b4ad3575/auspice/Gemfile.lock | |
working-directory: ${{ env.WORKING_DIR }} | |
- name: Configure credentials for GitHub Actions job access to AWS Batch | |
uses: aws-actions/configure-aws-credentials@v4 | |
with: | |
aws-region: us-east-1 | |
role-to-assume: arn:aws:iam::827581582529:role/GitHubActionsRoleNextstrainBatchJobs | |
- uses: nextstrain/.github/actions/setup-nextstrain-cli@master | |
- name: Download builds from AWS Batch | |
run: | | |
nextstrain build \ | |
--aws-batch \ | |
--attach "$AWS_BATCH_JOB_ID" \ | |
--download "$AUSPICE_DIR/*.json" \ | |
--no-logs \ | |
. | |
env: | |
AWS_BATCH_JOB_ID: ${{ inputs.aws_batch_job_id }} | |
- name: Move Auspice JSONs | |
run: | | |
mkdir data | |
mv "$AUSPICE_DIR"/*.json data/ | |
rm -r "$AUSPICE_DIR" | |
- name: Create index files | |
run: python provision_directories.py | |
- name: Build site | |
run: bundle exec jekyll build | |
- uses: actions/setup-node@v4 | |
with: | |
# Minimum node version to install Netlify CLI | |
# https://docs.netlify.com/cli/get-started/#installation | |
node-version: 18 | |
- name: Install Netlify CLI | |
run: npm install [email protected] -g | |
- name: Deploy to Netlify | |
run: netlify deploy --build --prod | |
env: | |
NETLIFY_SITE_ID: ${{ inputs.deploy_to_staging && secrets.NETLIFY_SITE_ID_STAGING || secrets.NETLIFY_SITE_ID }} | |
NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }} |