Remove deduplication on strain
#33
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Sequences are written by accession, which should already be unique. Metadata is deduplicated on strain, which may not be unique.
On the phylogenetic workflow side, the metadata is processed with accession as the ID column, which should be unique. De-duplicating on strain (which is what was previously done) would only result in a loss of data.
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Description of proposed changes
On the phylogenetic workflow side, the metadata is processed with accession as the ID column, which should be unique. De-duplicating on strain (which is what was previously done) would only result in a loss of data.
Furthermore, sequences are already written by accession so there is no need for deduplication there.
Related issue(s)
Prompted by Slack discussion.
Testing