update legacy clade definition to new reference sequences

nextstrain · Jan 19, 2024 · 8871ae3 · 8871ae3
1 parent 0c05325
commit 8871ae3
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Showing 2 changed files with 30 additions and 30 deletions.
diff --git a/config/clades_G_a.tsv b/config/clades_G_a.tsv
@@ -14,34 +14,34 @@ GA2.2	G	115	P
 
 GA2.3	G	122	A
 GA2.3	G	156	Q
-GA2.3	G	289	S
-GA2.3	G	269	T
+GA2.3	G	293	T
+GA2.3	G	313	S
 
-GA2.3.1	clade	GA2.3	
+GA2.3.1	clade	GA2.3
 GA2.3.1	G	254	E
 GA2.3.1	G	252	I
 
-GA2.3.2	clade	GA2.3	
+GA2.3.2	clade	GA2.3
 GA2.3.2	G	133	I
 
-GA2.3.2a	clade	GA2.3.2	
+GA2.3.2a	clade	GA2.3.2
 GA2.3.2a	G	242	S
 GA2.3.2a	G	225	I
 
-GA2.3.2b	clade	GA2.3.2	
+GA2.3.2b	clade	GA2.3.2
 GA2.3.2b	G	112	I
 GA2.3.2b	G	141	M
 GA2.3.2b	G	244	K
 
-GA2.3.3	clade	GA2.3	
+GA2.3.3	clade	GA2.3
 GA2.3.3	G	111	S
-GA2.3.3	G	292	S
+GA2.3.3	G	316	S
 
-GA2.3.4	clade	GA2.3	
+GA2.3.4	clade	GA2.3
 GA2.3.4	G	273	Y
 GA2.3.4	G	210	L
 
-GA2.3.5	clade	GA2.3	
+GA2.3.5	clade	GA2.3
 GA2.3.5	G	232	G
 GA2.3.5	G	253	K
 
@@ -55,28 +55,28 @@ GA3.0.1	G	102	F
 GA3.0.1	G	193	S
 GA3.0.1	G	295	I
 
-GA3.0.2	clade	GA3	
+GA3.0.2	clade	GA3
 GA3.0.2	G	113	A
 GA3.0.2	G	125	I
 GA3.0.2	G	274	T
 
-GA3.0.3	clade	GA3	
+GA3.0.3	clade	GA3
 GA3.0.3	G	161	D
 GA3.0.3	G	297	D
 
-GA3.0.3a	clade	GA3.0.3	
+GA3.0.3a	clade	GA3.0.3
 GA3.0.3a	G	232	D
 
-GA3.0.4a	clade	GA3.0.3a	
+GA3.0.4a	clade	GA3.0.3a
 GA3.0.4a	G	227	S
 
-GA3.0.3b	clade	GA3.0.3	
+GA3.0.3b	clade	GA3.0.3
 
-GA3.0.4b	clade	GA3.0.3b	
+GA3.0.4b	clade	GA3.0.3b
 GA3.0.4b 	G	219	P
 GA3.0.4b 	G	224	P
 GA3.0.4b 	G	208	Q
 GA3.0.4b 	G	246	L
 
-GA3.0.5b	clade	GA3.0.4b	
+GA3.0.5b	clade	GA3.0.4b
 GA3.0.5b	G	153	K
diff --git a/config/clades_G_b.tsv b/config/clades_G_b.tsv
@@ -1,52 +1,52 @@
 clade	gene	site	alt
 GB1	G	150	S
-GB1	G	280	I
+GB1	G	300	I
 GB1	G	208	I
 GB1	G	222	M
 
 GB2	G	118	T
 GB2	G	223	T
-GB2	G	257	L
+GB2	G	277	L
 
 GB3	G	136	I
 GB3	G	71	P
 GB3	G	109	L
 
 GB4	G	222	A
 GB4	G	219	S
-GB4	G	258	D
+GB4	G	278	D
 
 GB5	G	143	N
 GB5	G	237	P
 
 GB5.0.0	G	143	N
 GB5.0.0	G	237	P
 
-GB5.0.1	clade	GB5	
+GB5.0.1	clade	GB5
 GB5.0.1	G	247	P
 
-GB5.0.2	clade	GB5.0.1	
+GB5.0.2	clade	GB5.0.1
 GB5.0.2	G	223	P
 GB5.0.2	G	138	S
 
-GB5.0.3	clade	GB5.0.2	
-GB5.0.3	G	269	A
+GB5.0.3	clade	GB5.0.2
+GB5.0.3	G	289	A
 
-GB5.0.4a	G	282	T
+GB5.0.4a	G	302	T
 GB5.0.4a	G	200	T
 
-GB5.0.5a	clade	GB5.0.0	
+GB5.0.5a	clade	GB5.0.0
 GB5.0.5a	G	136	T
 
 GB5.0.4b	G	153	R
-GB5.0.4b	G	266	L
+GB5.0.4b	G	286	L
 
-GB5.0.4c	clade	GB5.0.3	
-GB5.0.4c	G	285	D
+GB5.0.4c	clade	GB5.0.3
+GB5.0.4c	G	305	D
 
 GB7	G	242	K
 GB7	G	214	I
 
 GB6	G	235	L
 GB6	G	126	K
-GB6	G	262	P
+GB6	G	282	P